View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15453_high_10 (Length: 405)
Name: NF15453_high_10
Description: NF15453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15453_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 9 - 392
Target Start/End: Complemental strand, 36205096 - 36204704
Alignment:
| Q |
9 |
tttggaatcacaatgaatttgaaaaaatcacggtgacacacact--gaaactattgtataaaattgcacgaaactaacaactgtcaaataactctcatat |
106 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
36205096 |
tttggaatcacaatgagtttgaaaaaatcacgatgacacacactatgaaactattgtataaaattgcacgaaactatcaactgtcaaaagactctcatat |
36204997 |
T |
|
| Q |
107 |
catggaggtactgtcaagctattgtactgaa--------attagatcactataattcatgaaatcttttagttagatagattttgcagatacatcacaaa |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |
|
|
| T |
36204996 |
catggaggtactgtcaagctattgtactgaataccattaattagatcactataattcatgaaatcttttagttacaaagattttgcagatacattacaaa |
36204897 |
T |
|
| Q |
199 |
atatgcnnnnnnngactcataaatgttgtatagctagatagattttgcagattttcttttcttttcaatccagtgagtaaccagtttgctcttttcctat |
298 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
36204896 |
atatgcaaaaaa-gactcataaatgttgtatagctagatagattttgcagattttcttttcttttcaatccagtgagtaccaagtttgctcttttcctat |
36204798 |
T |
|
| Q |
299 |
tgaaggtggtgccaattaatttcacttgtatacattaaaccttatagcacatgcccttgtgagagttgtgctgtgtctaatacatataatctct |
392 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36204797 |
tgaaggtggtgctaattaatttcacttgtatacattaaaccttatagcacatgcccttgtgagagttgtgctgtgtctaatacatataatctct |
36204704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University