View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15453_high_15 (Length: 268)
Name: NF15453_high_15
Description: NF15453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15453_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 72 - 258
Target Start/End: Original strand, 52809239 - 52809428
Alignment:
| Q |
72 |
ttgtggtgttaaaggttggtctttggatgccgacttaattataa---cttcagcagcatcatcatccaactcctcttggtcaccttgaacattgatactc |
168 |
Q |
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| T |
52809239 |
ttgtggtgttaaaggttggtctttggatgccgacttaattataataacttgagcatcatcatcatccaactcctcttggtcaccttgaacattgatactc |
52809338 |
T |
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| Q |
169 |
ttgtaccacttagcacagaacaagtaaatcacaaaatcaaaaacaactagtcctgctagaagaaagaaaaacctatccatgtgccctttg |
258 |
Q |
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| T |
52809339 |
ttgtaccacttagcacagaacaagtaaatcacaaaatcaaaaacaactagccctgctagaagaaagaaaaacctatccatgtgccctttg |
52809428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 52809205 - 52809239
Alignment:
| Q |
18 |
aaaaatagtatattttgttttttggatattattct |
52 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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| T |
52809205 |
aaaaatagtatattttgtttttgggatattattct |
52809239 |
T |
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