View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15453_high_3 (Length: 623)
Name: NF15453_high_3
Description: NF15453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15453_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 136; Significance: 1e-70; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 32903277 - 32903472
Alignment:
| Q |
11 |
gaagcaaaggtatattttattacacgtcttccttgtggtagtgacgatgcactgtttaaaaagttctaagaagttgtgaattttagtttaatttagtatc |
110 |
Q |
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| T |
32903277 |
gaagcaaaggtatgttccattacgcatcttccctgtgatagtggtgatgcactgtttaaaatgttctaataagttgtgaattttagtttaatttagtatc |
32903376 |
T |
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| Q |
111 |
aaatttctgttgacaggttgcagattttggtcttgcaaagactgcttctgatctcaatagtcatgtttctactcgagtgatggggactttcgggta |
206 |
Q |
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| T |
32903377 |
aaatttctgttgacaggttgctgattttggtcttgcaaagattgcttctgatctcaacactcatgtttctactcgagtgatggggactttcgggta |
32903472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 312 - 555
Target Start/End: Original strand, 32870199 - 32870442
Alignment:
| Q |
312 |
atatcatttatgatgtattaagctcatgaattatcaattgctgcttacaggtatctggctcctgaatatgcttttagtggaaaacttacagacaaagcag |
411 |
Q |
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| T |
32870199 |
atatcatttatgatatattaagctcatgaattatcaatagctgcttacaggtatctggatccagaatatgcttatactggacgacttactgataaatccg |
32870298 |
T |
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| Q |
412 |
atgtttactcttatggagtcatgctccttgagttaatatctggacgactaccggttgataagagtaagagctacatgaacggtagtttggttgagtgggt |
511 |
Q |
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| T |
32870299 |
atgtttactcttatggagtcgtgctccttgagttaataactggacgagtagcgattgataaagctaaccctcacatggacgttaatttggttgagtgggt |
32870398 |
T |
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| Q |
512 |
aagtgt--taccaccgtatagagttcatatattactccctccttct |
555 |
Q |
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| T |
32870399 |
aagtgttataccacc--atagagtttatatattactccctccttct |
32870442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 331 - 522
Target Start/End: Original strand, 32903548 - 32903739
Alignment:
| Q |
331 |
aagctcatgaattatcaattgctgcttacaggtatctggctcctgaatatgcttttagtggaaaacttacagacaaagcagatgtttactcttatggagt |
430 |
Q |
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| T |
32903548 |
aagctcatgagctatctattgctgtctacaggtatctggctccagaatatgctgctagtggaaaacttaccgataaatcagatgttttctcttatggagt |
32903647 |
T |
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| Q |
431 |
catgctccttgagttaatatctggacgactaccggttgataagagtaagagctacatgaacggtagtttggttgagtgggtaagtgttacca |
522 |
Q |
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| T |
32903648 |
catgctccttgagttattaactggacgacgaccggttgataaagatcagacttacatggatgatagtttggttgagtgggtaagtgttacca |
32903739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 32869972 - 32870170
Alignment:
| Q |
11 |
gaagcaaaggtatattttattacacgtcttccttgtggtagtgacgatgcactgtttaaaaagttctaa----gaagttgtgaattttagtttaatttag |
106 |
Q |
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| T |
32869972 |
gaagcaaaggtatgttccattacacatcttc-ttgtggcagtggtgatgcactgtttaaaatgttctaataattaagttgtgaatattagtttaatttag |
32870070 |
T |
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| Q |
107 |
tatcaaatttctgttgacaggttgcagattttggtcttgcaaagactgcttctgatctcaatagtcatgtttctactcgagtgatggggactttcgggta |
206 |
Q |
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| T |
32870071 |
tatcgaatttctgttgaaaggttgctgattttggtcttgcaaaggattcacctgattccagcactcacgtttctactcaagtgaaggggactttcgggta |
32870170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 9e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 342 - 522
Target Start/End: Original strand, 16394571 - 16394751
Alignment:
| Q |
342 |
ttatcaattgctgcttacaggtatctggctcctgaatatgcttttagtggaaaacttacagacaaagcagatgtttactcttatggagtcatgctccttg |
441 |
Q |
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| T |
16394571 |
ttatcaattgctgcttacaggtatatggctccagaatatgtctctagtggacaacttacagacaaatcagatgttttctcttatggagtcatactccttg |
16394670 |
T |
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| Q |
442 |
agttaatatctggacgactaccggttgataagagtaagagctacatgaacggtagtttggttgagtgggtaagtgttacca |
522 |
Q |
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|||||||| |||||||| ||| ||||||| ||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
16394671 |
agttaataactggacgaaagccgattgataaagataagacttacatgaacgatagtttggttgagtgggtaagtgttacca |
16394751 |
T |
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