View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15453_high_6 (Length: 529)
Name: NF15453_high_6
Description: NF15453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15453_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 16 - 526
Target Start/End: Original strand, 55171143 - 55171653
Alignment:
| Q |
16 |
caaaatctccacagtaaccactaggattaccaaagcttgcaaactcgacagcaacaatcttttttccgctgggacatttcagtgaagcttgtggtccaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
55171143 |
caaaatctccacagtaaccactaggattaccaaagcttgcaaactcgacagcaacaatctttttgccgctgggacatttcagtgaagcttgtggtccaga |
55171242 |
T |
|
| Q |
116 |
atttttgccaacagaacgaaattctccgttcttagatccccaagaattgacattggcaggactgttctctgtaatgtaactgcagattgtatctctgtca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55171243 |
atttttgccaacagaacgaaattctccgttcttagatccccaagaattgacattggcaggactgttctctgtaatgtaactgcagattgtatctctgtca |
55171342 |
T |
|
| Q |
216 |
acaatcattatctctattttttctggacttcccttctcctcttccaatacaacaagcaaattgtcctttgcattcaggtaatctcttgggatgtggtact |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55171343 |
acaatcattatctctattttttctggacttcccttctcctcttctaatacaacaagcaaattgtcctttgcattcaggtaatctcttgggatgtggtact |
55171442 |
T |
|
| Q |
316 |
ctgtttgactaggttgtccaagaggggagaggaatgacatccagtgacgaccgatgctttttccgttcacccaaatcattccttttcccataccagtcat |
415 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55171443 |
cttcttgactaggttgtccaagaggggagaggaatgacatccagtgacgaccgatgctttttccgttcacccaaatcattccttttcccataccagtcat |
55171542 |
T |
|
| Q |
416 |
cctgatggcaactggacctcttccctctggtgtggcaaatcttgtcttcaaccaggagagagcacgtgtttctcctgtgactggatcccattgaaccttc |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55171543 |
cctgatggcaactggacctcttccctctggtgtggcaaatcttgtcttcaaccaggagagtgcacgtgtttctcctgtgactggatcccattgaaccttc |
55171642 |
T |
|
| Q |
516 |
tgtgctccttc |
526 |
Q |
| |
|
| || |||||| |
|
|
| T |
55171643 |
tttgatccttc |
55171653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 312 - 430
Target Start/End: Complemental strand, 27724384 - 27724266
Alignment:
| Q |
312 |
tactctgtttgactaggttgtccaagaggggagaggaatgacatccagtgacgaccgatgctttttccgttcacccaaatcattccttttcccataccag |
411 |
Q |
| |
|
||||||| |||| |||| | ||||||||| |||||| | ||||||||||||||| ||||||| || || |||||||||||||||||| ||||||| |
|
|
| T |
27724384 |
tactctgattgagtaggctttccaagaggagagaggtagctcatccagtgacgaccaatgctttcaccattaacccaaatcattccttttgccatacctt |
27724285 |
T |
|
| Q |
412 |
tcatcctgatggcaactgg |
430 |
Q |
| |
|
||| | |||||||||||| |
|
|
| T |
27724284 |
ccattccgatggcaactgg |
27724266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University