View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15453_high_8 (Length: 472)
Name: NF15453_high_8
Description: NF15453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15453_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 13 - 454
Target Start/End: Complemental strand, 41946135 - 41945692
Alignment:
| Q |
13 |
aatatgattgaaaacttgtttttctttatttgatttgtgaacataaatcatttcatgtcattagttaagacgtgataatatattgaaatatttagtttta |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41946135 |
aatatgattgaaaacttgtttttctttatttgatttgtgaacataaatcatttcatgtcgttagttaagacgtgataatatattgaaatatttagtttta |
41946036 |
T |
|
| Q |
113 |
aaaagtgttaatgtaatgttttgtggatctnnnnnnntattcttagagagatcctgatgttggg-aaagagcacaattttctatagttatggcaaatggc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41946035 |
aaaagtgttaatgtaatgttttgtggatctaaaaaaatattcttagagagatcctgatgttggggaaagagcacaattttctatagttatggcaaatggc |
41945936 |
T |
|
| Q |
212 |
tcttaatgaagcttttcaatcaattgtagaaaaagattagggtatatcgtggtcttggagttggaatcaaaccaacaagaggaaaacttttaagaaattt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41945935 |
tcttaatgaagcttttcaatcaattgtagaaaaagattagggtatatcgtggtcttggagttggaatcaaaccaacaagaggaaaacttttaagaaattt |
41945836 |
T |
|
| Q |
312 |
aattttttgaaaatatgtgcttccaaggacaaagttcctaggaaagttcaaccacaaaattcagga-ttttttctatataatttcttcctcttcttcttc |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
41945835 |
aattttttgaaaatatgtgcttccaaggacaaagttcctaggaaagttcaaccacaaaattcatgatttttttctatataatttcttcctcttcttcttc |
41945736 |
T |
|
| Q |
411 |
tcaactaaagagacacctcttggactcatatgtaagaacattat |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41945735 |
tcaactaaagagacacctcttggactcatatgtaagaacattat |
41945692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University