View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15453_high_9 (Length: 419)
Name: NF15453_high_9
Description: NF15453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15453_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 15 - 411
Target Start/End: Original strand, 39026075 - 39026471
Alignment:
| Q |
15 |
acttttacctccttataaaactaaattaattcaagttaagataagatgatgatagaagaaggtaccaagaaagacatatatgcatatccacatagagaga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39026075 |
acttttacctccttataaaactaaattaattcaagttaagataagatgatgatagaagaaggtaccaagaaagacatatatgcacatccacatagagaga |
39026174 |
T |
|
| Q |
115 |
aagagagcatataccctacatgtgggaatggtttggggacaaagcaaagaaagcatatagtgcatgcaaacaattcacatgggagcataacatgatcttc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39026175 |
aagagagcatataccctacatgtgggaatggtttggggacaaagcaaagaaagcaaatagtgcatgcaaacaattcacatggaagcataacatgatcttc |
39026274 |
T |
|
| Q |
215 |
acaagaagtcctcacttttccctctctttcacagctcataccccaaatcccacgagtcctcacaattctagttttaactatatcccttaaactactgtac |
314 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39026275 |
acaggaagtcctcacttttccctctctttcacagctcataccccaaatcccacgagtcctcacaattctagttttaactatatcccttaaactactgtac |
39026374 |
T |
|
| Q |
315 |
ctatacttagctttttaatgataaaatgattaatgtaacacgtcacacaccatgcataacctcttataaatataataatatctcatgcacatggtct |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39026375 |
ctatacttagctttttaatgataaaatgattaatgtaacacgtcacacaccatgcataacctcttataaatataataatatcttatgcacatggtct |
39026471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 30722757 - 30722839
Alignment:
| Q |
123 |
atataccctacatgtgggaatggtttggggacaaagcaaagaaagc--atatagtgcatgcaaacaattcacatgggagcata |
203 |
Q |
| |
|
|||||||| |||||||| ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| ||||| |
|
|
| T |
30722757 |
atatacccaacatgtggcaatggtttgtggacaaagcaaagaaagctagcatagtgcatgcaatcaattcacatgggcgcata |
30722839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University