View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15453_low_1 (Length: 666)
Name: NF15453_low_1
Description: NF15453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15453_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 17 - 661
Target Start/End: Original strand, 45408125 - 45408768
Alignment:
| Q |
17 |
aataaatacattttcaagatgcttgacaaagtcttctgagtagatttaatttctcagaaatttgagtaataattttgatgcattcaagcttattccaatt |
116 |
Q |
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| T |
45408125 |
aataaatacattttcaagatgcttgacaaagtcttctgagtagatttaatttctcagaaatttgagtaataattttgatgcattcaagcttattccaatt |
45408224 |
T |
|
| Q |
117 |
cgccacttattttgctttcnnnnnnnatatttnnnnnnnngtatccgaataaacattaaattttgagatcacatacgtaataagtcaataaaagtaaagt |
216 |
Q |
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||||||||||||||||||| |||||| ||| ||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
45408225 |
cgccacttattttgctttctttttttatatttaaaaaaa--tattcgaataatcatgaaattttgagatcacatacctaataagtcaataaaagtaaatt |
45408322 |
T |
|
| Q |
217 |
tgtactaaatgctaatggactaaaagagagttgtcaagttgctaagaaattgaacaacatgattcaactttcgttgttggtacaaagatcttgttgatga |
316 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45408323 |
tgtgctaaatgctaatggactaaaagagagttgtcaagttgctaagaaattgaataacatgattcaactttcgttgttggtacaaagatctcgttgatga |
45408422 |
T |
|
| Q |
317 |
ataatgtataagtattttgtgaacactattatttattgtgatattacaagtgtcaattaaagtttctcatttgatgaaaaagttgaatttgagcaa-cat |
415 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45408423 |
gtaatgtataagtattttgtgaacactattatttactgtgatattacaagtgtcaattaaagtttctcatttgatgaaaaagttgaatttgagcaaacat |
45408522 |
T |
|
| Q |
416 |
taaagtaagatgatctataaattcaatattcaaaagattttggtgaagatatatcttcaatctcacttatgtggttgttcttaatttaatgaaatgattt |
515 |
Q |
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| T |
45408523 |
taaagtaagatgatctataaattcaatattcaaaagattttggtgaagatatatatacaatctcacttgtgtggttgttcttaatttaatgaaatgattt |
45408622 |
T |
|
| Q |
516 |
aacctaatgagattctcgttcatatatccaacattatttaactcttaaagacgtattctaatatgatgaaccccataatctaaatcacctaataattttt |
615 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45408623 |
aacataatgagattctcgttcatatatccaacattatttaactcctaaagacgtattctaatatgatgaaccccataatctaaatcacctaataattttt |
45408722 |
T |
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| Q |
616 |
tatacaaaaatagttgcactcaatggaactagtaccctttgctact |
661 |
Q |
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|||||||||||||||||||||| | |||||||||||||||| |||| |
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| T |
45408723 |
tatacaaaaatagttgcactcagtagaactagtaccctttgttact |
45408768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 472 - 506
Target Start/End: Complemental strand, 11655342 - 11655308
Alignment:
| Q |
472 |
tcaatctcacttatgtggttgttcttaatttaatg |
506 |
Q |
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| T |
11655342 |
tcaatctcacttatgtggttgttcttaatctaatg |
11655308 |
T |
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