View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15453_low_13 (Length: 385)
Name: NF15453_low_13
Description: NF15453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15453_low_13 |
 | |
|
| [»] scaffold0922 (1 HSPs) |
| | |
|
| [»] scaffold0257 (1 HSPs) |
| | |
|
| [»] scaffold1142 (1 HSPs) |
| | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 18)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 37 - 364
Target Start/End: Original strand, 8539014 - 8539342
Alignment:
| Q |
37 |
ggagaagaatatgtacaagaggggggactataccaaaactctccaataacgatnnnnnnnnnnnnnntaa-taccttcagaaggctttgaaggagactga |
135 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
8539014 |
ggagaagaatatgtacaagtggggggactataccaaaactctccaataacgataaaaaaaaaataaaaaaataccttcagaaggctttgaaggagactga |
8539113 |
T |
|
| Q |
136 |
gatggaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaatatttgagcttactttcatggcaacatcatcat |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8539114 |
gatggaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaatatttgagcttactttcatggcaacatcatcat |
8539213 |
T |
|
| Q |
236 |
ttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggat |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8539214 |
ttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggat |
8539313 |
T |
|
| Q |
336 |
tcttcaccttgattaatattagtgttact |
364 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8539314 |
tcttcaccttgattaatattagtgttact |
8539342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 105 - 364
Target Start/End: Complemental strand, 28151964 - 28151709
Alignment:
| Q |
105 |
aataccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaata |
204 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||| ||||| |||||||||||||||||||||| | |||||||| | ||||| || || | || |
|
|
| T |
28151964 |
aataccttcagaaggctttgaaggaaactgagatgcaatagaagagggtcttgatttggaaactaatatgttatcatcctttgaaaactgatcctcagta |
28151865 |
T |
|
| Q |
205 |
tttgagcttactttcatggcaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaagg |
304 |
Q |
| |
|
||||||||| |||||||| || ||||||||||||| || ||| ||||| | ||||||| ||||||| | |||||| ||||| ||||||| || ||| |
|
|
| T |
28151864 |
tttgagcttgctttcatgacattatcatcatttagagaaactg-acaaaagatgggaaacaagagagctaaacttc---aaaataaaaagggcgatgagg |
28151769 |
T |
|
| Q |
305 |
taacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttact |
364 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||| | |||||||||||| |
|
|
| T |
28151768 |
taacttaagaaaataaaagcgatccaaagattcttcaccttgatcatcattagtgttact |
28151709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 105 - 346
Target Start/End: Original strand, 17744321 - 17744559
Alignment:
| Q |
105 |
aataccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaata |
204 |
Q |
| |
|
||||||| ||| ||||||||||||| |||| |||| ||||||||| || |||||||||||||||||||||| |||| |||||||| | || || |||| |
|
|
| T |
17744321 |
aatacctccagtaggctttgaaggatactgggatgcaatacaagatggtattgatttggaaactaatatttcatcatttttaggaaattgatcctcaata |
17744420 |
T |
|
| Q |
205 |
tttgagcttactttcatggcaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaagg |
304 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| || ||| |||||||||| ||||||||||||||||||||| ||||||||||| | || ||| |
|
|
| T |
17744421 |
tttgagcttactttcacaacatcatcatcatttagagaaactggacaaagggtgagaaagaagagagttcaacttc---aaaatgaaaagagcgatgagg |
17744517 |
T |
|
| Q |
305 |
taacttaagaaaataaaactgatccaaggattcttcaccttg |
346 |
Q |
| |
|
|||||||||||||||||| ||||||| |||| || |||||| |
|
|
| T |
17744518 |
taacttaagaaaataaaatcgatccaaagattttttaccttg |
17744559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 105 - 346
Target Start/End: Original strand, 19045641 - 19045879
Alignment:
| Q |
105 |
aataccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaata |
204 |
Q |
| |
|
||||||| ||| ||||||||||||| |||| |||| ||||||||| || |||||||||||||||||||||| |||| |||||||| | || || |||| |
|
|
| T |
19045641 |
aatacctccagtaggctttgaaggatactgggatgcaatacaagatggtattgatttggaaactaatatttcatcatttttaggaaattgatcctcaata |
19045740 |
T |
|
| Q |
205 |
tttgagcttactttcatggcaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaagg |
304 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| || ||| |||||||||| ||||||||||||||||||||| ||||||||||| | || ||| |
|
|
| T |
19045741 |
tttgagcttactttcacaacatcatcatcatttagagaaactggacaaagggtgagaaagaagagagttcaacttc---aaaatgaaaagagcgatgagg |
19045837 |
T |
|
| Q |
305 |
taacttaagaaaataaaactgatccaaggattcttcaccttg |
346 |
Q |
| |
|
|||||||||||||||||| ||||||| |||| || |||||| |
|
|
| T |
19045838 |
taacttaagaaaataaaatcgatccaaagattttttaccttg |
19045879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 107 - 364
Target Start/End: Complemental strand, 28037752 - 28037498
Alignment:
| Q |
107 |
taccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaatatt |
206 |
Q |
| |
|
|||||||||||||| |||||||| | ||||||| |||| ||||| ||||||||||||||||||| || || |||||||||| ||||| || || |||||| |
|
|
| T |
28037752 |
taccttcagaaggcattgaaggaaaatgagatgcaatagaagagggtcttgatttggaaactaacatgtcatcatccttagaaaactgatcctcaatatt |
28037653 |
T |
|
| Q |
207 |
tgagcttactttcatggcaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggta |
306 |
Q |
| |
|
||| |||||||||||| || |||||||||| || || ||||||| | ||||| ||||||| ||||| |||||| |||||||||||||||| ||||| |
|
|
| T |
28037652 |
tgaacttactttcatgacattatcatcatttggataaactgaacagaaggtggaaaagaagcgagttaaacttc---aaaatgaaaagggtgatgaggta |
28037556 |
T |
|
| Q |
307 |
acttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttact |
364 |
Q |
| |
|
|||| ||||||||| |||||||||| || |||| ||||||| | |||||||||||| |
|
|
| T |
28037555 |
actttagaaaataacactgatccaaagagtctttaccttgaccatcattagtgttact |
28037498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 201 - 348
Target Start/End: Complemental strand, 11421206 - 11421063
Alignment:
| Q |
201 |
aatatttgagcttactttcatggcaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgac |
300 |
Q |
| |
|
|||||||| |||| |||||||| || |||||||||||||| | |||| |||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11421206 |
aatatttgtgcttgctttcatgacagcatcatcatttagagcaactga-caaacagtgggaaagaagagagttcaacttct---aaatgaaaagggtgat |
11421111 |
T |
|
| Q |
301 |
aaggtaacttaagaaaataaaactgatccaaggattcttcaccttgat |
348 |
Q |
| |
|
|||||||||||||||||||||||||||| || || |||||||||| |
|
|
| T |
11421110 |
gtcgtaacttaagaaaataaaactgatccaaagagtcatcaccttgat |
11421063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 206 - 364
Target Start/End: Complemental strand, 28162090 - 28161935
Alignment:
| Q |
206 |
ttgagcttactttcatggcaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggt |
305 |
Q |
| |
|
||||| ||||||| ||| | |||| ||||||||| || ||||||||| |||| || |||||||| || ||||||| ||||||||||||||| || | |
|
|
| T |
28162090 |
ttgaggttacttttatgacggcatcgtcatttagagaaactgaacaaaaggtgtgagagaagagatttaaacttca---aaatgaaaagggtgatgagat |
28161994 |
T |
|
| Q |
306 |
aacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttact |
364 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||||||||||| | |||||||||||| |
|
|
| T |
28161993 |
aacttaagaaaataaaattgatccaaagagtcttcaccttgatcatcattagtgttact |
28161935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 206 - 348
Target Start/End: Complemental strand, 28186133 - 28185994
Alignment:
| Q |
206 |
ttgagcttactttcatggcaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggt |
305 |
Q |
| |
|
||||| ||||||| || || |||||||||||||| || ||||||||| |||| || |||||||| || ||||||| ||||||||||||||| || | |
|
|
| T |
28186133 |
ttgaggttacttttataacagcatcatcatttagagaaactgaacaaaaggtgtgagagaagagatttaaacttca---aaatgaaaagggtgatgagat |
28186037 |
T |
|
| Q |
306 |
aacttaagaaaataaaactgatccaaggattcttcaccttgat |
348 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
28186036 |
aacttaagaaaataaaattgatccaaagagtcttcaccttgat |
28185994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 178 - 309
Target Start/End: Original strand, 27458745 - 27458873
Alignment:
| Q |
178 |
tcatccttaggaaactcattctgaatatttgagcttactttcatggcaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaac |
277 |
Q |
| |
|
||||| |||||||||| ||||| |||||||||||||||||| ||| || |||||||||||||| || ||||||||| || | ||||||||| ||| ||| |
|
|
| T |
27458745 |
tcatcgttaggaaactgattctcaatatttgagcttacttttatgacagcatcatcatttagagaaactgaacaaaaagttgcaaagaagagggttaaac |
27458844 |
T |
|
| Q |
278 |
ttcatgaaaatgaaaagggtgacaaggtaact |
309 |
Q |
| |
|
||| |||||||||||||||| ||| ||||| |
|
|
| T |
27458845 |
ttc---aaaatgaaaagggtgataagataact |
27458873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 206 - 364
Target Start/End: Complemental strand, 28150181 - 28150026
Alignment:
| Q |
206 |
ttgagcttactttcatggcaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggt |
305 |
Q |
| |
|
||||| ||||||| | | || |||| ||||||||| || ||||||||| |||| || |||||||| || ||||||| ||||||||||||||| || | |
|
|
| T |
28150181 |
ttgaggttacttttacgacagcatcctcatttagagaaactgaacaaaaggtgtgagagaagagatttaaacttca---aaatgaaaagggtgatgagat |
28150085 |
T |
|
| Q |
306 |
aacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttact |
364 |
Q |
| |
|
||||||||||||||||| |||||| | || ||||||||||||| | |||||||||||| |
|
|
| T |
28150084 |
aacttaagaaaataaaattgatcctaagactcttcaccttgatcatcattagtgttact |
28150026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 105 - 237
Target Start/End: Complemental strand, 11421534 - 11421402
Alignment:
| Q |
105 |
aataccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaata |
204 |
Q |
| |
|
|||||||||| ||| ||| ||||| ||||||||| |||| ||||| |||||||||||||||||||||| || |||||| ||||||||| | || | || |
|
|
| T |
11421534 |
aataccttcaacaggttttaaaggatactgagatgcaatataagagggtcttgatttggaaactaatatatcatcatccgtaggaaactgttcctcagta |
11421435 |
T |
|
| Q |
205 |
tttgagcttactttcatggcaacatcatcattt |
237 |
Q |
| |
|
||||| ||||||||| || | ||||||||||| |
|
|
| T |
11421434 |
tttgatcttactttcttgaaagcatcatcattt |
11421402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 348
Target Start/End: Original strand, 28479791 - 28479930
Alignment:
| Q |
206 |
ttgagcttactttcatggcaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggt |
305 |
Q |
| |
|
||||| ||||||| ||| || ||||||||||| | || |||| |||| |||| || |||||||| || ||||||| ||||| ||||||||| |||| |
|
|
| T |
28479791 |
ttgaggttacttttatgacagaatcatcatttacagaaactgagcaaaaggtgtgagagaagagaattaaacttca---aaatgcaaagggtgatgaggt |
28479887 |
T |
|
| Q |
306 |
aacttaagaaaataaaactgatccaaggattcttcaccttgat |
348 |
Q |
| |
|
|| |||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
28479888 |
aaattaagaaaataaaattgatccaaagagtcttcaccttgat |
28479930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 348
Target Start/End: Original strand, 28508974 - 28509113
Alignment:
| Q |
206 |
ttgagcttactttcatggcaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggt |
305 |
Q |
| |
|
||||| ||||||| ||| || ||||||||||| | || |||| |||| |||| || |||||||| || ||||||| ||||| ||||||||| |||| |
|
|
| T |
28508974 |
ttgaggttacttttatgacagaatcatcatttacagaaactgagcaaaaggtgtgagagaagagaattaaacttca---aaatgcaaagggtgatgaggt |
28509070 |
T |
|
| Q |
306 |
aacttaagaaaataaaactgatccaaggattcttcaccttgat |
348 |
Q |
| |
|
|| |||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
28509071 |
aaattaagaaaataaaattgatccaaagagtcttcaccttgat |
28509113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 27430809 - 27430870
Alignment:
| Q |
105 |
aataccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttggaaa |
166 |
Q |
| |
|
|||| |||||| ||||||||||||| ||||||||| |||| ||||| ||||||||||||||| |
|
|
| T |
27430809 |
aataacttcagcaggctttgaaggacactgagatgcaatataagagggtcttgatttggaaa |
27430870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 27920520 - 27920463
Alignment:
| Q |
105 |
aataccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttg |
162 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||| ||||| |||||||||| |
|
|
| T |
27920520 |
aataccttcagaaggctttgaaggaaactgagatgcaatagaagaggttcttgatttg |
27920463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 364
Target Start/End: Complemental strand, 27920436 - 27920301
Alignment:
| Q |
228 |
atcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaa---cttaagaaaataaaact |
324 |
Q |
| |
|
||||||||||||| || ||| |||| ||||||||||||||||||| |||||| |||||||||| ||||| |||||| |||| ||||| || ||| |
|
|
| T |
27920436 |
atcatcatttagagaaactgtccaaaaggtgggaaagaagagagttaaacttc---aaaatgaaaa-ggtgatgaggtaattgcttatgaaaacaacact |
27920341 |
T |
|
| Q |
325 |
gatccaaggattcttcaccttgattaatattagtgttact |
364 |
Q |
| |
|
|||||| || | ||||||||||| | |||||||||||| |
|
|
| T |
27920340 |
aatccaaagagttttcaccttgatcatcattagtgttact |
27920301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 356
Target Start/End: Complemental strand, 27378598 - 27378544
Alignment:
| Q |
302 |
aggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatatta |
356 |
Q |
| |
|
||||||| ||||||||||||| |||||||| | ||||||||||||||| ||||| |
|
|
| T |
27378598 |
aggtaacataagaaaataaaattgatccaaaaagtcttcaccttgattattatta |
27378544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 299
Target Start/End: Complemental strand, 28136532 - 28136448
Alignment:
| Q |
212 |
ttactttcatggcaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtga |
299 |
Q |
| |
|
||||||| ||| || |||||||||||| | || ||||||||| |||| || ||||||||||| || ||| |||||||||||||||| |
|
|
| T |
28136532 |
ttacttttatgacagcatcatcatttacagaaactgaacaaatggtgtgagagaagagagttaaagttc---aaaatgaaaagggtga |
28136448 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 105 - 344
Target Start/End: Complemental strand, 8021145 - 8020911
Alignment:
| Q |
105 |
aataccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaata |
204 |
Q |
| |
|
|||||||| || || |||||||||| |||||||| |||| ||||| ||||||||||||||||||||||||| || ||||| ||||||| | || |||| |
|
|
| T |
8021145 |
aataccttgagtagactttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaata |
8021046 |
T |
|
| Q |
205 |
tttgagcttactttcatggcaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaagg |
304 |
Q |
| |
|
||||| |||||||||||| || | |||||||||||| || ||| | ||| |||||||||||||| || | |||||| ||||||||||||| || || |
|
|
| T |
8021045 |
tttgatcttactttcatgacatcgtcatcatttagagaaactg-agaaaaggtgggaaagaaga-aggttaacttc---aaaatgaaaagggcgatgaga |
8020951 |
T |
|
| Q |
305 |
taacttaagaaaataaaactgatccaaggattcttcacct |
344 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||||||||||| |
|
|
| T |
8020950 |
taacttaagaaaagaaaaccgatccaaagattcttcacct |
8020911 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 22393571 - 22393515
Alignment:
| Q |
302 |
aggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagt |
358 |
Q |
| |
|
||||||| ||||||||||||| |||||||| | |||||||||||||| |||||||| |
|
|
| T |
22393571 |
aggtaacataagaaaataaaattgatccaaaaagtcttcaccttgattgatattagt |
22393515 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0922 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0922
Description:
Target: scaffold0922; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 105 - 323
Target Start/End: Complemental strand, 2053 - 1840
Alignment:
| Q |
105 |
aataccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaata |
204 |
Q |
| |
|
|||||||| || ||||||||||||| |||||||| |||| | |||| |||||||||||||||||||||| ||||||||| |||| | || || |||| |
|
|
| T |
2053 |
aataccttgagcaggctttgaaggacactgagatacaatagtacagagctttgatttggaaactaatatttcatcatccttaagaaattgatcctcaata |
1954 |
T |
|
| Q |
205 |
tttgagcttactttcatggcaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaagg |
304 |
Q |
| |
|
| |||||||||||||||| | |||||||||||| |||| ||||||||| |||||||| | ||||| |||||| |||||||||||||||| || |
|
|
| T |
1953 |
tctgagcttactttcatgatagcatcatcatttaaaaaaactgaacaaaatgtgggaaata--agagtcaaacttc---aaaatgaaaagggtgatgtgg |
1859 |
T |
|
| Q |
305 |
taacttaagaaaataaaac |
323 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1858 |
taacttaagaaaataaaac |
1840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 348
Target Start/End: Complemental strand, 19265 - 19152
Alignment:
| Q |
232 |
tcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaa |
331 |
Q |
| |
|
||||||||| || ||||||||| |||| || ||||||||||| || |||| ||||||||||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
19265 |
tcatttagagaaactgaacaaaaggtgtgagagaagagagttaaatttca---aaatgaaaagggtgatgaggtaacttaagaaaataatattgatccaa |
19169 |
T |
|
| Q |
332 |
ggattcttcaccttgat |
348 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
19168 |
agagtcttcaccttgat |
19152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1142 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1142
Description:
Target: scaffold1142; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 621 - 538
Alignment:
| Q |
157 |
gatttggaaactaatatttcttcatccttaggaaactcattctgaatatttgagcttactttcatggcaacatcatcatttaga |
240 |
Q |
| |
|
|||| ||||| || |||||| |||||||||||||||| | || ||||||| |||||||||||||| ||||||| ||||||||| |
|
|
| T |
621 |
gattgggaaattattatttcatcatccttaggaaactgttcctcaatatttaagcttactttcatgacaacatcgtcatttaga |
538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 358
Target Start/End: Original strand, 52825 - 52881
Alignment:
| Q |
302 |
aggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagt |
358 |
Q |
| |
|
||||||| ||||||||||||| |||||||| | |||||||||||||| |||||||| |
|
|
| T |
52825 |
aggtaacataagaaaataaaattgatccaaaaagtcttcaccttgattgatattagt |
52881 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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