View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15453_low_17 (Length: 332)
Name: NF15453_low_17
Description: NF15453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15453_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 318
Target Start/End: Complemental strand, 24991646 - 24991329
Alignment:
| Q |
14 |
tactagaattccttcgacatgaacatttatttacagg-tgcaaaaaataaagaaa------------tagaaatccccagcattctctatcaccaaatgt |
100 |
Q |
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| T |
24991646 |
tactagaattccttcgacataaacatttatttacagggtgcaaaaaataaagaaaaagaaatagaaatagaaatccccagcattctctatcaccaaatgt |
24991547 |
T |
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| Q |
101 |
tggaagatgaacaaacttgagtacacttccacttttcttccttggccgtggtaacttgtaacacacttcacagtaagataatgctgtgtaataactgttc |
200 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24991546 |
tggaagatgaacaaacttgaatacacttctacttttcttccttggccgtggtaacttgtaacacacttcacagtaagataatgctgtgtaataactgttc |
24991447 |
T |
|
| Q |
201 |
acaaactttattacatatttatatttatatgtacttctaatcaagaactcagatatcataaaactggagagtgctcgctatctgaatgaagnnnnnnnng |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
24991446 |
acaaactttattacatatttatatttatatatacttctaatcaagaactcagatatcataaaactggagagtgctctctatctgaatgaagaaaaaaaag |
24991347 |
T |
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| Q |
301 |
tatgtcttctcttagagt |
318 |
Q |
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|||||||||||||||||| |
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| T |
24991346 |
tatgtcttctcttagagt |
24991329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 162 - 290
Target Start/End: Complemental strand, 24995151 - 24995021
Alignment:
| Q |
162 |
cacacttcacagtaagataatgctgtgtaataactgttcacaaactttatta--catatttatatttatatgtacttctaatcaagaactcagatatcat |
259 |
Q |
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||||||||||||||||||||||| | |||| |||||||| ||| ||||| |||||||||||||| || |||||||| | ||||| ||||||||||| |
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| T |
24995151 |
cacacttcacagtaagataatgccgcgtaagtactgttcaagaacactattatacatatttatatttagatatacttctagtaaagaattcagatatcat |
24995052 |
T |
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| Q |
260 |
aaaactggagagtgctcgctatctgaatgaa |
290 |
Q |
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|| ||| |||||||||| |||||| |||||| |
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| T |
24995051 |
aatacttgagagtgctctctatctaaatgaa |
24995021 |
T |
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