View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15453_low_2 (Length: 653)

Name: NF15453_low_2
Description: NF15453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15453_low_2
NF15453_low_2
[»] chr4 (7 HSPs)
chr4 (75-635)||(18903642-18904198)
chr4 (200-248)||(34968342-34968390)
chr4 (193-249)||(49488549-49488605)
chr4 (200-250)||(23626379-23626429)
chr4 (209-250)||(5185126-5185167)
chr4 (201-242)||(37970188-37970229)
chr4 (202-243)||(50650551-50650592)
[»] chr3 (6 HSPs)
chr3 (200-242)||(47496999-47497041)
chr3 (194-248)||(22534572-22534626)
chr3 (205-263)||(28230208-28230266)
chr3 (209-242)||(2105720-2105753)
chr3 (193-257)||(29164759-29164823)
chr3 (207-255)||(45669638-45669686)
[»] chr8 (4 HSPs)
chr8 (193-250)||(28439957-28440014)
chr8 (209-261)||(12249507-12249559)
chr8 (208-248)||(1041792-1041832)
chr8 (209-249)||(39756968-39757008)
[»] chr1 (3 HSPs)
chr1 (208-250)||(15973031-15973073)
chr1 (205-247)||(29059423-29059465)
chr1 (209-251)||(40618907-40618949)
[»] chr5 (2 HSPs)
chr5 (205-254)||(11665997-11666046)
chr5 (200-249)||(24802709-24802758)
[»] chr2 (1 HSPs)
chr2 (205-262)||(41555280-41555337)
[»] chr7 (1 HSPs)
chr7 (206-250)||(19097609-19097653)


Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 75 - 635
Target Start/End: Original strand, 18903642 - 18904198
Alignment:
Q  75 tgcatagattagatatttttcactcttattttannnnnnnactctgctcacaccatttatattcctctttgtatgtatatatcataaatgttcaaaatan 174  Q
    ||||||||||||||||| |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||  | |||||||||||| ||     
T  18903642 tgcatagattagatattgttcactcttattttatttttt-actctgctcacaccatttatattcctctttgtatgtatat--cgtaaatgttcaaagtat 18903738  T
Q  175 nnnnnng--gtggtggtcagg-----aacccaagactttatatatattatacattatttttaccaactgaattaaactcacgaaaacaaatgttcaaagt 267  Q
             ||||||||||||     ||||| |||| ||| ||||||||| ||||||||||| |||||||  ||||||||||| ||||||||||||||||    
T  18903739 tttttttttgtggtggtcagggtttgaaccccagaccttacatatattatgcattatttttatcaactgagctaaactcacgagaacaaatgttcaaagt 18903838  T
Q  268 attttaaacaacttaagatatttcatactaattttacattgatatggagttgatgataagaaaataaatatgaaatttcaaaggaaaaataagatgtaaa 367  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||||||    
T  18903839 attttaaacaactgaagatatttcatactaattttacattgatatggagttgatta---gaaaataaatatgaaatttcaaaggaaaaataagatgtaaa 18903935  T
Q  368 acgtttaagataattaataaattaattatactatttggtacaaactaaaaataattaatgttaacagcctcaatgcatataatcacacagtcacaactca 467  Q
     ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    ||||||| |||||||||||||||||||||||||||||||||    
T  18903936 -cgtttaagataattaataaattaattatactatttcgtacaaactaaaaataat----gttaacaacctcaatgcatataatcacacagtcacaactca 18904030  T
Q  468 ctggctgcttgtcttcttcttacttgtaatttcctcactgttaagaaaatcaagcaacatagtactcttgcacttgggacatttgggatcaacttctggt 567  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18904031 ctagctgcttgtcttcttcttacttgtaatttcctcactgttaagaaaatcaagcaacacagtactcttgcacttgggacatttgggatcaacttctggt 18904130  T
Q  568 accataacatacatgaggcatcgagtgcaaccaacaagaagcatggtttttgtctcttcagcagcatc 635  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18904131 accataacatacatgaggcatcgagtgcaaccaacaagaagcatggtttttgtctcttcagcagcatc 18904198  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 34968390 - 34968342
Alignment:
Q  200 agactttatatatattatacattatttttaccaactgaattaaactcac 248  Q
    |||||||| ||||||||| ||||||||||||||||||| |||| |||||    
T  34968390 agactttacatatattatgcattatttttaccaactgagttaagctcac 34968342  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 49488549 - 49488605
Alignment:
Q  193 gaacccaagactttatatatattatacattatttttaccaactgaattaaactcacg 249  Q
    |||||| | |||||| ||||| |||||||||||| ||||||||||| ||||||||||    
T  49488549 gaaccctaaactttacatataatatacattatttctaccaactgaactaaactcacg 49488605  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 200 - 250
Target Start/End: Complemental strand, 23626429 - 23626379
Alignment:
Q  200 agactttatatatattatacattatttttaccaactgaattaaactcacga 250  Q
    |||| |||||||||||||||||| | | |||||||||| ||||||||||||    
T  23626429 agacattatatatattatacattgtctataccaactgagttaaactcacga 23626379  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 5185167 - 5185126
Alignment:
Q  209 atatattatacattatttttaccaactgaattaaactcacga 250  Q
    |||||||||||||||| | |||||||||| ||||||||||||    
T  5185167 atatattatacattatctataccaactgagttaaactcacga 5185126  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 37970188 - 37970229
Alignment:
Q  201 gactttatatatattatacattatttttaccaactgaattaa 242  Q
    ||||||| |||||||||||||| ||| |||||||||||||||    
T  37970188 gactttacatatattatacattttttataccaactgaattaa 37970229  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 50650592 - 50650551
Alignment:
Q  202 actttatatatattatacattatttttaccaactgaattaaa 243  Q
    |||||| || |||||| |||||||||||||||||||||||||    
T  50650592 actttacatttattatgcattatttttaccaactgaattaaa 50650551  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 47496999 - 47497041
Alignment:
Q  200 agactttatatatattatacattatttttaccaactgaattaa 242  Q
    |||||||| ||||||||||||||||||||||||||| ||||||    
T  47496999 agactttacatatattatacattatttttaccaactaaattaa 47497041  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 22534572 - 22534626
Alignment:
Q  194 aacccaagactttatatatattatacattatttttaccaactgaattaaactcac 248  Q
    ||||| ||||||| ||||| ||||||||||||| |||||||||| ||||| ||||    
T  22534572 aaccccagactttgtatattttatacattatttataccaactgagttaaattcac 22534626  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 28230208 - 28230266
Alignment:
Q  205 ttatatatattatacattatttttaccaactgaattaaactcacgaaaacaaatgttca 263  Q
    |||||||||||||||||||||| ||  |||||| ||||||||||||  | |||||||||    
T  28230208 ttatatatattatacattatttctattaactgagttaaactcacgatgataaatgttca 28230266  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 2105720 - 2105753
Alignment:
Q  209 atatattatacattatttttaccaactgaattaa 242  Q
    ||||||||||||||||||||||||||||| ||||    
T  2105720 atatattatacattatttttaccaactgagttaa 2105753  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 29164759 - 29164823
Alignment:
Q  193 gaacccaagactttatatatattatacattatttttaccaactgaattaaactcacgaaaacaaa 257  Q
    |||||| |||||||  |||||||||||||||||   ||||| ||||||||||| |||| ||||||    
T  29164759 gaaccccagactttgcatatattatacattattccaaccaattgaattaaacttacgagaacaaa 29164823  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 45669638 - 45669686
Alignment:
Q  207 atatatattatacattatttttaccaactgaattaaactcacgaaaaca 255  Q
    |||||||||||||||| ||| |||||| ||| |||||||||||| ||||    
T  45669638 atatatattatacattgtttctaccaattgagttaaactcacgagaaca 45669686  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 28440014 - 28439957
Alignment:
Q  193 gaacccaagactttatatatattatacattatttttaccaactgaattaaactcacga 250  Q
    |||||| |||| ||| ||||||||| |||||| |||| ||||||||||||||||||||    
T  28440014 gaaccccagaccttacatatattatgcattatctttatcaactgaattaaactcacga 28439957  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 12249507 - 12249559
Alignment:
Q  209 atatattatacattatttttaccaactgaattaaactcacgaaaacaaatgtt 261  Q
    |||||||||||||||| |||||||| ||| |||| |||||||| |||||||||    
T  12249507 atatattatacattatctttaccaattgagttaagctcacgaagacaaatgtt 12249559  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 1041832 - 1041792
Alignment:
Q  208 tatatattatacattatttttaccaactgaattaaactcac 248  Q
    |||||||||| || |||||||| ||||||||||||||||||    
T  1041832 tatatattatgcaatatttttatcaactgaattaaactcac 1041792  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 39757008 - 39756968
Alignment:
Q  209 atatattatacattatttttaccaactgaattaaactcacg 249  Q
    ||||||||||||||||||||||||||| | |||| ||||||    
T  39757008 atatattatacattatttttaccaactaagttaagctcacg 39756968  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 15973073 - 15973031
Alignment:
Q  208 tatatattatacattatttttaccaactgaattaaactcacga 250  Q
    ||||||||||||||||||||||||||||||  ||| |||||||    
T  15973073 tatatattatacattatttttaccaactgagctaacctcacga 15973031  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 29059423 - 29059465
Alignment:
Q  205 ttatatatattatacattatttttaccaactgaattaaactca 247  Q
    ||||||||||||| ||||||| |||||||||||||||| ||||    
T  29059423 ttatatatattatgcattattcttaccaactgaattaagctca 29059465  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 40618949 - 40618907
Alignment:
Q  209 atatattatacattatttttaccaactgaattaaactcacgaa 251  Q
    ||||||||| |||||| |||||||||||| |||||||||||||    
T  40618949 atatattatgcattatctttaccaactgagttaaactcacgaa 40618907  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 11666046 - 11665997
Alignment:
Q  205 ttatatatattatacattatttttaccaactgaattaaactcacgaaaac 254  Q
    ||||||||||||| |||| ||| |||||||||||||||||| ||| ||||    
T  11666046 ttatatatattatgcattgtttctaccaactgaattaaacttacggaaac 11665997  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 24802709 - 24802758
Alignment:
Q  200 agactttatatatattatacattatttttaccaactgaattaaactcacg 249  Q
    |||||||||||||||||| || |||| |||| |||||| |||||||||||    
T  24802709 agactttatatatattatgcaatattcttacaaactgagttaaactcacg 24802758  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 41555337 - 41555280
Alignment:
Q  205 ttatatatattatacattatttttaccaactgaattaaactcacgaaaacaaatgttc 262  Q
    |||||| |||||| |||| ||  |||||||||| |||||||||||| |||||||||||    
T  41555337 ttatatgtattatgcattgttcctaccaactgagttaaactcacgagaacaaatgttc 41555280  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 19097653 - 19097609
Alignment:
Q  206 tatatatattatacattatttttaccaactgaattaaactcacga 250  Q
    ||||||||| || |||| |||||| ||||||||||||||||||||    
T  19097653 tatatatatcatgcattgtttttatcaactgaattaaactcacga 19097609  T

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