View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15453_low_22 (Length: 265)
Name: NF15453_low_22
Description: NF15453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15453_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 76 - 238
Target Start/End: Original strand, 50899245 - 50899407
Alignment:
| Q |
76 |
ttaaataaccctaatatttcattgccgtaggcactcacaacgtgaaaccgcttcatgttttgcaaaatcttaagccacaattcgattcaccttttcaaac |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50899245 |
ttaaataaccctaatatttcattgccgtagtcactcacaacgtgaaatcgcttcatgttttgcaaaatcttaagccacaattcgattcaccttttcaaac |
50899344 |
T |
|
| Q |
176 |
tcaacctcgataaacgctgccatgagtttcttttaaccacctgtaggtatagttatatttgcg |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50899345 |
tcaacctcgataaacgctgccatgagtttcttttaaccacctgtaggtatagttatatttgcg |
50899407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 50899193 - 50899263
Alignment:
| Q |
1 |
aacagtgctcggttttcattttacgccggggaaaaatgggctttgcccgttattaaataactctaatattt |
71 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
50899193 |
aacagtgctcggtttccattttacgcgggggaaaaatgggcttggcccgttattaaataaccctaatattt |
50899263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University