View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15453_low_26 (Length: 250)
Name: NF15453_low_26
Description: NF15453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15453_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 15073659 - 15073442
Alignment:
| Q |
14 |
cataggtgaagttatcacattggcacacttacacaaagaaagtgaagacgaaatcttataaatgttactattctccgaatctagaatcagaagctcccca |
113 |
Q |
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| T |
15073659 |
cataggtgaagttatcacattggcacacttacacaaagaaagtgaagacgaaatcttataaatgttactattctccgaatctagaatcagaagctcccca |
15073560 |
T |
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| Q |
114 |
ttagacaacacctcaactgcataaggctcaattccaagcttgcttccatcaaacacagtttccacattgtatccactctcaaacttcatcattgacttcc |
213 |
Q |
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| T |
15073559 |
ttagacaacacctcaactgcataaggctcaattccaagcttgcttccatcaaacacagtttccacattgtatccactctcaaacttcatcattgacttcc |
15073460 |
T |
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| Q |
214 |
cagcaatcgctgccattc |
231 |
Q |
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| T |
15073459 |
cagcaatcgctgccattc |
15073442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 40 - 205
Target Start/End: Original strand, 26717666 - 26717831
Alignment:
| Q |
40 |
acttacacaaagaaagtgaagacgaaatcttataaatgttactattctccgaatctagaatcagaagctccccattagacaacacctcaactgcataagg |
139 |
Q |
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| T |
26717666 |
acttacacaaagagagtgatgaagagattctgtaaaggttactattagcagaatcaagaataagaagctccccattatgcaaaacctcaacagcataagg |
26717765 |
T |
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| Q |
140 |
ctcaattccaagcttgcttccatcaaacacagtttccacattgtatccactctcaaacttcatcat |
205 |
Q |
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| T |
26717766 |
ctcaattccaagcttacttccatcaaacacagtttccacattgtaaccactctcaaatttcatcat |
26717831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 1851052 - 1850989
Alignment:
| Q |
138 |
ggctcaattccaagcttgcttccatcaaacacagtttccacattgtatccactctcaaacttca |
201 |
Q |
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| T |
1851052 |
ggctcaattccaagcttacttccatcaaatattgtttccacattgtaaccactctcaaatttca |
1850989 |
T |
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