View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15453_low_27 (Length: 246)

Name: NF15453_low_27
Description: NF15453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15453_low_27
NF15453_low_27
[»] chr3 (8 HSPs)
chr3 (1-240)||(5578100-5578339)
chr3 (123-189)||(32077480-32077546)
chr3 (123-189)||(51646885-51646951)
chr3 (123-174)||(4737800-4737851)
chr3 (123-189)||(46835541-46835607)
chr3 (124-161)||(8508672-8508709)
chr3 (139-189)||(8507228-8507279)
chr3 (1-47)||(5559694-5559739)
[»] chr8 (3 HSPs)
chr8 (123-174)||(14836399-14836450)
chr8 (123-174)||(27229237-27229288)
chr8 (123-174)||(30850214-30850265)
[»] chr1 (2 HSPs)
chr1 (114-189)||(20602208-20602284)
chr1 (123-174)||(29308696-29308747)
[»] chr6 (2 HSPs)
chr6 (123-174)||(29279776-29279827)
chr6 (122-174)||(9852102-9852154)
[»] chr4 (4 HSPs)
chr4 (130-189)||(47965540-47965599)
chr4 (109-166)||(14866628-14866686)
chr4 (123-164)||(30179071-30179112)
chr4 (137-174)||(52525953-52525990)
[»] chr2 (4 HSPs)
chr2 (123-174)||(28296914-28296965)
chr2 (123-174)||(24538237-24538288)
chr2 (130-174)||(22142305-22142349)
chr2 (123-157)||(7828944-7828978)
[»] chr7 (2 HSPs)
chr7 (113-174)||(27965240-27965304)
chr7 (130-174)||(45824591-45824635)
[»] scaffold0596 (1 HSPs)
scaffold0596 (127-174)||(1695-1742)


Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 5578339 - 5578100
Alignment:
Q  1 tcatgatagtaagcaaaatgatctgccacgcgtatttttcattttctacaaagtaaacttctattataaaggagagagatataagtcgatcttttgaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5578339 tcatgatagtaagcaaaatgatctgccacgcgtatttttcattttctacaaagtaaacttctattataaaggagagagatataagtcgatcttttgaata 5578240  T
Q  101 atctagttatatcatatcatatatacttatttctaatatgaataacattgttaacaatttgtgccaaccctaatgtagatggttttggccagaacagttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||| |||||| |||    
T  5578239 atctagttatatcatatcatatatacttatttctaatatgaataacattgttaacaatttgtgccaaccctaattctgatggttttggctagaacaattt 5578140  T
Q  201 ggagccaaaaaagttgttatggcagttagatgcatctgtg 240  Q
    ||||||||||||  |||| |||| ||||||||||| ||||    
T  5578139 ggagccaaaaaaactgttctggccgttagatgcatttgtg 5578100  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 32077546 - 32077480
Alignment:
Q  123 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaatgtagatggttttggc 189  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||| | ||||||||||||    
T  32077546 atacttatttctaatatgaataacattgctaacaatttatgccaaccctaatcttgatggttttggc 32077480  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 51646885 - 51646951
Alignment:
Q  123 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaatgtagatggttttggc 189  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||| |||||||    
T  51646885 atacttatttctaatatgaataacattgttaacaatttgtgtcaaccctaatcttgatgtttttggc 51646951  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 4737851 - 4737800
Alignment:
Q  123 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 174  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  4737851 atacttatttctaatatgaataacattgctaacaaattgtgccaaccctaat 4737800  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 46835607 - 46835541
Alignment:
Q  123 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaatgtagatggttttggc 189  Q
    ||||||||||||||||||||||||| | ||||||| ||||| |||||||||| | ||||||||||||    
T  46835607 atacttatttctaatatgaataacaatattaacaaattgtgtcaaccctaatcttgatggttttggc 46835541  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 8508709 - 8508672
Alignment:
Q  124 tacttatttctaatatgaataacattgttaacaatttg 161  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8508709 tacttatttctaatatgaataacattgttaacaatttg 8508672  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 8507279 - 8507228
Alignment:
Q  139 tgaataacattgttaacaatttgtgccaaccc-taatgtagatggttttggc 189  Q
    ||||||| |||||||||||||||||||||||| |||| | ||||||||||||    
T  8507279 tgaataatattgttaacaatttgtgccaacccttaatcttgatggttttggc 8507228  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5559739 - 5559694
Alignment:
Q  1 tcatgatagtaagcaaaatgatctgccacgcgtatttttcattttct 47  Q
    ||||||||||||||||| ||  |||||||||||||||||||||||||    
T  5559739 tcatgatagtaagcaaa-tgtcctgccacgcgtatttttcattttct 5559694  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 14836399 - 14836450
Alignment:
Q  123 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14836399 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 14836450  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 27229237 - 27229288
Alignment:
Q  123 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 174  Q
    |||||||||||||||||||||| ||||||||| |||||| | ||||||||||    
T  27229237 atacttatttctaatatgaatagcattgttaataatttgcgtcaaccctaat 27229288  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 30850265 - 30850214
Alignment:
Q  123 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 174  Q
    ||||||||||||||||||||||||| || ||| || ||||||||||||||||    
T  30850265 atacttatttctaatatgaataacactgctaaaaaattgtgccaaccctaat 30850214  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 20602208 - 20602284
Alignment:
Q  114 atatcatat-atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaatgtagatggttttggc 189  Q
    ||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||    
T  20602208 atatcatatcatatttaattctaatatgaataacattgttaacaatttgtgccaaccctcatcttgatggttttggc 20602284  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 29308696 - 29308747
Alignment:
Q  123 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 174  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||    
T  29308696 atacttatttctaatatgaataacattgttaacaaattgtgtcaaccttaat 29308747  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 29279776 - 29279827
Alignment:
Q  123 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 174  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  29279776 atacttatttctaatatgaatagcattgttaacaaattgtgccaaccctaat 29279827  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 9852102 - 9852154
Alignment:
Q  122 tatacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 174  Q
    |||||||||||||||||||||||||| || ||| || ||||||||||||||||    
T  9852102 tatacttatttctaatatgaataacactgctaaaaaattgtgccaaccctaat 9852154  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 47965599 - 47965540
Alignment:
Q  130 tttctaatatgaataacattgttaacaatttgtgccaaccctaatgtagatggttttggc 189  Q
    ||||||||||||||||||||| |||||||||||||||||||||||   ||||||||||||    
T  47965599 tttctaatatgaataacattgctaacaatttgtgccaaccctaatcctgatggttttggc 47965540  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 14866686 - 14866628
Alignment:
Q  109 atatcatatcatat-atacttatttctaatatgaataacattgttaacaatttgtgcca 166  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||    
T  14866686 atatcatatcatatcatacttatttctaatatgaataacaatgttaacaaattgtgcca 14866628  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 30179112 - 30179071
Alignment:
Q  123 atacttatttctaatatgaataacattgttaacaatttgtgc 164  Q
    |||||||||||||||||||||||||||| |||||| ||||||    
T  30179112 atacttatttctaatatgaataacattgctaacaaattgtgc 30179071  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 52525990 - 52525953
Alignment:
Q  137 tatgaataacattgttaacaatttgtgccaaccctaat 174  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  52525990 tatgaataacattgctaacaatttgtgtcaaccctaat 52525953  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 28296965 - 28296914
Alignment:
Q  123 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 174  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  28296965 atacttatttctaatatgaatagcattgttaacaaattgtgccaaccctaat 28296914  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 24538237 - 24538288
Alignment:
Q  123 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 174  Q
    ||||||||||||||||||||||||| ||||||||| ||||| ||||||||||    
T  24538237 atacttatttctaatatgaataacaatgttaacaaattgtgtcaaccctaat 24538288  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 22142349 - 22142305
Alignment:
Q  130 tttctaatatgaataacattgttaacaatttgtgccaaccctaat 174  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||    
T  22142349 tttctaatatgaatagcattgttaacaaattgtgccaaccctaat 22142305  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 157
Target Start/End: Complemental strand, 7828978 - 7828944
Alignment:
Q  123 atacttatttctaatatgaataacattgttaacaa 157  Q
    ||||||||||||||||||||||||| |||||||||    
T  7828978 atacttatttctaatatgaataacaatgttaacaa 7828944  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 27965304 - 27965240
Alignment:
Q  113 catatcatat-atacttatttctaatatg--aataacattgttaacaatttgtgccaaccctaat 174  Q
    |||||||||| |||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  27965304 catatcatatcatacttatttctaatatataaataacattgttaacaatttgtgccaaccctaat 27965240  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 45824591 - 45824635
Alignment:
Q  130 tttctaatatgaataacattgttaacaatttgtgccaaccctaat 174  Q
    |||||||||  |||| ||||| |||||||||||||||||||||||    
T  45824591 tttctaatagcaatagcattgctaacaatttgtgccaaccctaat 45824635  T

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Target: scaffold0596 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 1742 - 1695
Alignment:
Q  127 ttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 174  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||    
T  1742 ttatttctaatatgaataacaatgttaacattttgtgccaaccctaat 1695  T

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