View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15453_low_4 (Length: 606)

Name: NF15453_low_4
Description: NF15453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15453_low_4
NF15453_low_4
[»] chr4 (36 HSPs)
chr4 (9-592)||(7876880-7877463)
chr4 (9-414)||(7774164-7774575)
chr4 (9-173)||(7904611-7904775)
chr4 (39-176)||(7907901-7908038)
chr4 (39-173)||(7770983-7771117)
chr4 (39-173)||(7789668-7789802)
chr4 (41-166)||(45372424-45372549)
chr4 (33-173)||(7822548-7822688)
chr4 (39-171)||(45366583-45366718)
chr4 (39-166)||(48862827-48862957)
chr4 (33-171)||(7800218-7800356)
chr4 (33-171)||(7813061-7813199)
chr4 (39-165)||(49041503-49041629)
chr4 (40-173)||(7238086-7238219)
chr4 (39-135)||(7786060-7786156)
chr4 (41-161)||(48156794-48156914)
chr4 (39-171)||(48890990-48891122)
chr4 (36-130)||(48870164-48870258)
chr4 (36-130)||(48885850-48885944)
chr4 (41-173)||(33134190-33134325)
chr4 (39-135)||(7765238-7765334)
chr4 (44-175)||(49044599-49044730)
chr4 (71-173)||(33133616-33133718)
chr4 (67-176)||(48902526-48902635)
chr4 (11-135)||(48735649-48735776)
chr4 (35-124)||(48875474-48875563)
chr4 (52-172)||(49048977-49049095)
chr4 (39-127)||(37827359-37827447)
chr4 (39-135)||(50668660-50668756)
chr4 (206-241)||(7907830-7907865)
chr4 (14-173)||(47207513-47207672)
chr4 (45-162)||(45385158-45385275)
chr4 (35-127)||(48148043-48148138)
chr4 (41-129)||(48170953-48171044)
chr4 (32-88)||(50251166-50251222)
chr4 (39-127)||(48898347-48898438)
[»] chr8 (6 HSPs)
chr8 (47-172)||(12194881-12195006)
chr8 (47-172)||(12439309-12439434)
chr8 (11-135)||(15348479-15348603)
chr8 (51-173)||(12199886-12200008)
chr8 (51-173)||(12444314-12444436)
chr8 (41-126)||(4032283-4032368)
[»] chr1 (5 HSPs)
chr1 (478-583)||(17782561-17782664)
chr1 (39-130)||(24309799-24309890)
chr1 (43-135)||(24322079-24322171)
chr1 (41-172)||(24339994-24340125)
chr1 (42-172)||(24415417-24415546)
[»] chr5 (6 HSPs)
chr5 (11-130)||(29712806-29712925)
chr5 (32-124)||(29695780-29695872)
chr5 (39-127)||(1812050-1812138)
chr5 (35-166)||(178605-178739)
chr5 (71-130)||(42562728-42562787)
chr5 (39-127)||(29687676-29687764)
[»] chr3 (4 HSPs)
chr3 (39-166)||(11024902-11025029)
chr3 (66-173)||(47452299-47452406)
chr3 (39-173)||(11015890-11016024)
chr3 (44-173)||(11006332-11006461)
[»] scaffold0508 (1 HSPs)
scaffold0508 (39-124)||(11890-11975)
[»] chr6 (2 HSPs)
chr6 (44-173)||(21015355-21015484)
chr6 (44-173)||(21980014-21980143)


Alignment Details
Target: chr4 (Bit Score: 477; Significance: 0; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 9 - 592
Target Start/End: Complemental strand, 7877463 - 7876880
Alignment:
Q  9 ataattctaggagtgtgcattgtggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttga 108  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7877463 ataattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttga 7877364  T
Q  109 aacgtataagagacttcaccggcaaccaaatcaggatttggataatcaattcatgaggaagatacggccgtgnnnnnnnnnnnnnnnnnnccgtgcactc 208  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||                  || |||||||    
T  7877363 aacgtataagagacttcaccagcaaccaaatcaggatttggataatcaattcatgaggaagatacggccgtgtcttcttcttcttctcctccatgcactc 7877264  T
Q  209 taccatcttgtaaaccctaattttacaggaaggtaaaaaaccgatgagtgttataagccgagttttaaaaaccgatgatagtgtcattaaaccgggaaaa 308  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7877263 taccatcttgtaaatcctaattttacaggaaggtaaaaaaccgatgagtgttataagccgagttttaaaaaccgatgatagtgtcattaaatcgggaaaa 7877164  T
Q  309 caccggattgaaccggctgaaacnnnnnnncttgtgcggaacacgaaatagcggcagtttgcctaaaatgaccttgattttaaaaaacttttgagggtag 408  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7877163 caccggattgaaccggctgaaacaaaaaaacttgtgcggaacacgaaatagcggcagtttgcctaaaatgaccttgattttaaaaaactttcgagggtag 7877064  T
Q  409 tttggattgatggattaaaagttgtgcattggatgccaatgtcaatttatttggctatattttctgctgtttaacttttaaatgtgcaaaatataaaatg 508  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7877063 tttggattgatggattaaaagttgtgcattggatgccagtgtcaatttatttggctatattttctgctgtttaacttctaaatgtgcaaaatataaaatg 7876964  T
Q  509 gatatataaaactagtgggaaatctatgcattgttaattctgaaagagatacattaagcatttttcaaaacctcaatgagattg 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7876963 gatatataaaactagtgggaaatctatgcattgttaattctgaaagagatacattaagcatttttcaaaacctcaatgagattg 7876880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 414
Target Start/End: Original strand, 7774164 - 7774575
Alignment:
Q  9 ataattctaggagtgtgcattgtggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttga 108  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||    
T  7774164 ataattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaacacatttga 7774263  T
Q  109 aacgtataagagacttcaccggcaaccaaatcaggatttggataatcaattcatgaggaagatacggccgtgnnnnnnnnnnnnnnnnnnccgtgcactc 208  Q
    || | ||||||||||||||||||| ||  |||| |||||| ||||||||||||||||||||||||||| |||                   ||||| |||    
T  7774264 aatgaataagagacttcaccggcagccgcatcaagatttgaataatcaattcatgaggaagatacggcagtgtcttctgcttcttctcctgcgtgctctc 7774363  T
Q  209 taccatcttgtaaaccctaattttacaggaaggtaaaaaaccgatgag---tgttataagccgagttttaaaaaccgatgatagtgtcattaaaccggga 305  Q
    |||||||||||||||||||||||||||| |||| |||| | |||| ||   ||||||||||||||||||||||| || |||||||||||||||||| ||     
T  7774364 taccatcttgtaaaccctaattttacagaaagggaaaataacgatcagtgttgttataagccgagttttaaaaatcggtgatagtgtcattaaaccaggg 7774463  T
Q  306 aaacaccggattgaaccggctgaaac---nnnnnnncttgtgcggaacacgaaatagcggcagtttgcctaaaatgaccttgattttaaaaaacttttga 402  Q
    ||| || |||||||||||||||||||          |||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||| ||||||    
T  7774464 aaaaactggattgaaccggctgaaacaaaaaaaaaacttgtgcggaacacgaaatagcagcagtttgccaaaactgaccttgattttaaaaaagttttga 7774563  T
Q  403 gggtagtttgga 414  Q
     |||||||||||    
T  7774564 aggtagtttgga 7774575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 9 - 173
Target Start/End: Complemental strand, 7904775 - 7904611
Alignment:
Q  9 ataattctaggagtgtgcattgtggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttga 108  Q
    ||||||||||||||||    || || ||||||||||||||||||||||||||| |  ||||||||||||||||||||||||| ||||||||  |||||||    
T  7904775 ataattctaggagtgttagctgcggcggtgagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttga 7904676  T
Q  109 aacgtataagagacttcaccggcaaccaaatcaggatttggataatcaattcatgaggaagatac 173  Q
    ||||||||||||||||||| |||||||| |||| |||||| |||||||||||| |||||||||||    
T  7904675 aacgtataagagacttcacaggcaaccacatcaagatttgaataatcaattcacgaggaagatac 7904611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 39 - 176
Target Start/End: Complemental strand, 7908038 - 7907901
Alignment:
Q  39 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaa 138  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||  ||||| ||   | ||||||||| |||||||||||||||||||||  |    
T  7908038 agttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaacctca 7907939  T
Q  139 tcaggatttggataatcaattcatgaggaagatacggc 176  Q
      ||||| |||| |||||||||||||||||||||||||    
T  7907938 gtaggatctggaaaatcaattcatgaggaagatacggc 7907901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 39 - 173
Target Start/End: Complemental strand, 7771117 - 7770983
Alignment:
Q  39 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaa 138  Q
    |||||||||||||||||| |||| |  |||||||||||||||||||||||   |||||||| ||||||||||| |||||||||||||||||||||||  |    
T  7771117 agttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctca 7771018  T
Q  139 tcaggatttggataatcaattcatgaggaagatac 173  Q
    |||| |||||||| || | ||||||||| ||||||    
T  7771017 tcagaatttggattattagttcatgaggcagatac 7770983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 39 - 173
Target Start/End: Complemental strand, 7789802 - 7789668
Alignment:
Q  39 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaa 138  Q
    |||||||||||||||||| |||| |  ||||| ||||||| |||||||||   |||||||| ||||||||||| |||||||||||||||||||||||  |    
T  7789802 agttgaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctca 7789703  T
Q  139 tcaggatttggataatcaattcatgaggaagatac 173  Q
    |||| |||||||| |||| ||||||||| ||||||    
T  7789702 tcagaatttggattatcagttcatgaggcagatac 7789668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 41 - 166
Target Start/End: Original strand, 45372424 - 45372549
Alignment:
Q  41 ttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatc 140  Q
    |||||||||||||||||||||||  ||||||||||||| |||||||||   ||||||||  ||||||||||||||||||||||||||||||||||  |      
T  45372424 ttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaaccttagt 45372523  T
Q  141 aggatttggataatcaattcatgagg 166  Q
    || ||||| || ||||||||||||||    
T  45372524 agaatttgaatcatcaattcatgagg 45372549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 33 - 173
Target Start/End: Complemental strand, 7822688 - 7822548
Alignment:
Q  33 gtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggca 132  Q
    ||||||| |||||| |||||||||||||| | |||||||||||||||||||||||||   |||||||  || ||||||||||||||| ||||||||||||    
T  7822688 gtggtgaattgaaattgtgaatttgcaaagtggggatcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggca 7822589  T
Q  133 accaaatcaggatttggataatcaattcatgaggaagatac 173  Q
    |||  | || |||| |||| ||||| | |||||| ||||||    
T  7822588 acctcaacaagattaggattatcaaatgatgaggcagatac 7822548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 39 - 171
Target Start/End: Original strand, 45366583 - 45366718
Alignment:
Q  39 agttgaaaatgtgaatttgcaaaattgggatca---gagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaacc 135  Q
    ||||||||||||||||||||||| |  | ||||   |||||||||||||||||   |||||||| ||| ||||||||||||||||||||||| || ||||    
T  45366583 agttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaacc 45366682  T
Q  136 aaatcaggatttggataatcaattcatgaggaagat 171  Q
      |  ||||||||||| |||||||||||||||||||    
T  45366683 ttagtaggatttggatcatcaattcatgaggaagat 45366718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 39 - 166
Target Start/End: Complemental strand, 48862957 - 48862827
Alignment:
Q  39 agttgaaaatgtgaatttgcaaaattgggatca---gagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaacc 135  Q
    ||||||||||||||||||||||| |  ||||||   |||||||||||||||||   ||| |||| |||||||||||| ||||||||||||||||| ||||    
T  48862957 agttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcaccggtaacc 48862858  T
Q  136 aaatcaggatttggataatcaattcatgagg 166  Q
      | ||||||| |||| ||||||||||||||    
T  48862857 ttagcaggattaggatgatcaattcatgagg 48862827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 33 - 171
Target Start/End: Complemental strand, 7800356 - 7800218
Alignment:
Q  33 gtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggca 132  Q
    ||||||| |||||| ||||||||||||||   ||||||||||| |||||||||||||   |||||||  || ||||||||||||||| ||||||||||||    
T  7800356 gtggtgaattgaaattgtgaatttgcaaagcggggatcagagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggca 7800257  T
Q  133 accaaatcaggatttggataatcaattcatgaggaagat 171  Q
    |||  | || |||| |||| ||||| |||||||| ||||    
T  7800256 acctcaacaagattaggattatcaaatcatgaggcagat 7800218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 33 - 171
Target Start/End: Complemental strand, 7813199 - 7813061
Alignment:
Q  33 gtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggca 132  Q
    ||||||| |||||| ||||| |||||||| | ||| |||||||||||||||||||||   |||||||  || ||||||||||||||| ||||||||||||    
T  7813199 gtggtgaattgaaattgtgactttgcaaagtggggttcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggca 7813100  T
Q  133 accaaatcaggatttggataatcaattcatgaggaagat 171  Q
    |||  | || |||| |||| ||||| |||||||| ||||    
T  7813099 acctcaacaagattaggattatcaaatcatgaggcagat 7813061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 39 - 165
Target Start/End: Original strand, 49041503 - 49041629
Alignment:
Q  39 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaa 138  Q
    |||| |||||| ||||||||||||| ||||||||||||||||||||||||   ||| |||| |||||||||||  |||||||||||||| ||||| |  |    
T  49041503 agttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaacaaataagagacttcactggcaatctca 49041602  T
Q  139 tcaggatttggataatcaattcatgag 165  Q
    | || ||| |||| |||||||||||||    
T  49041603 ttagaattaggatgatcaattcatgag 49041629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 40 - 173
Target Start/End: Original strand, 7238086 - 7238219
Alignment:
Q  40 gttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaat 139  Q
    |||| ||||||||||||||||| |  || ||||||||||||||||||||   ||||||||  ||||||||||  |||||||||||||| |||||||  ||    
T  7238086 gttggaaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcactggcaacctcat 7238185  T
Q  140 caggatttggataatcaattcatgaggaagatac 173  Q
    ||| |||||||| || | ||||||||| ||||||    
T  7238186 cagaatttggatgattagttcatgaggcagatac 7238219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 39 - 135
Target Start/End: Complemental strand, 7786156 - 7786060
Alignment:
Q  39 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaacc 135  Q
    ||||| ||||||||||||||||| |  ||||||||||||| ||||| |||||||||||||| |||||||||   ||||||||| |||||||||||||    
T  7786156 agttggaaatgtgaatttgcaaattgaggatcagagataatagaaatccatagcttacaaacgcatttgaacaatataagagatttcaccggcaacc 7786060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 41 - 161
Target Start/End: Original strand, 48156794 - 48156914
Alignment:
Q  41 ttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatc 140  Q
    ||||||||| |||||||||||||  | ||| |||||||||||||||||   |||||||| ||| |||||||||| ||||||||||||||| ||||| |      
T  48156794 ttgaaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaaccataaa 48156893  T
Q  141 aggatttggataatcaattca 161  Q
    |||||||| || |||||||||    
T  48156894 aggatttgaattatcaattca 48156914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 39 - 171
Target Start/End: Complemental strand, 48891122 - 48890990
Alignment:
Q  39 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaa 138  Q
    ||||||||||| |||||||||||||  ||||| |||| ||||||||||||   |||||||| |||||||||||||||||||||||| ||||  ||||  |    
T  48891122 agttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccgataacctca 48891023  T
Q  139 tcaggatttggataatcaattcatgaggaagat 171  Q
     ||  |||| ||||||||| || ||||||||||    
T  48891022 acataatttcgataatcaactcgtgaggaagat 48890990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 36 - 130
Target Start/End: Complemental strand, 48870258 - 48870164
Alignment:
Q  36 gtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccgg 130  Q
    ||||| |||||||||||||||||||||  |||||| ||||||||| |||||||   |||||||| |||||||||||| |||||||| ||||||||    
T  48870258 gtgagatgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccgg 48870164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 36 - 130
Target Start/End: Complemental strand, 48885944 - 48885850
Alignment:
Q  36 gtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccgg 130  Q
    ||||| |||||||||||||||||||||  |||||| ||||||||| |||||||   |||||||| |||||||||||| |||||||| ||||||||    
T  48885944 gtgagatgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccgg 48885850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 173
Target Start/End: Original strand, 33134190 - 33134325
Alignment:
Q  41 ttgaaaatgtgaatttgcaaaattgggatca---gagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaa 137  Q
    ||||||||||||||||||||| |  ||||||   |||||||||||||| ||  ||||||||| |||||||||||| ||||||||||||||||| || |      
T  33134190 ttgaaaatgtgaatttgcaaagtgaggatcattagagataagagaaaatcaaggcttacaaacgcatttgaaacgaataagagacttcaccggtaatctc 33134289  T
Q  138 atcaggatttggataatcaattcatgaggaagatac 173  Q
    | ||| ||  |||| |||||||||||||| ||||||    
T  33134290 aacagaataaggatgatcaattcatgaggcagatac 33134325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 39 - 135
Target Start/End: Complemental strand, 7765334 - 7765238
Alignment:
Q  39 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaacc 135  Q
    ||||| ||||||||||||||||| |  ||||||||||||| ||||||||||| |||||||||||| ||||||  ||  |||||||||||||| ||||    
T  7765334 agttggaaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacc 7765238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 49044599 - 49044730
Alignment:
Q  44 aaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatcagg 143  Q
    |||||||||||||||||| | ||  | |||||||||||||||||||| ||||||||  || |||||||||| ||||||| |||| |||||||  | |||     
T  49044599 aaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcactggcaacctcagcaga 49044698  T
Q  144 atttggataatcaattcatgaggaagatacgg 175  Q
    ||  |||| ||||| |||||||| ||||||||    
T  49044699 ataaggatgatcaagtcatgaggcagatacgg 49044730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 71 - 173
Target Start/End: Complemental strand, 33133718 - 33133616
Alignment:
Q  71 agagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatcaggatttggataatcaattcatgaggaaga 170  Q
    |||||||||||||||||| |||||||||||| |||||||||| |||||||||||||  || ||||  | ||| ||  |||| |||||||||||||| |||    
T  33133718 agagataagagaaaaccaaagcttacaaatgaatttgaaacgaataagagacttcattggtaaccttagcagaataaggatgatcaattcatgaggcaga 33133619  T
Q  171 tac 173  Q
    |||    
T  33133618 tac 33133616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 67 - 176
Target Start/End: Complemental strand, 48902635 - 48902526
Alignment:
Q  67 gatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatcaggatttggataatcaattcatgagg 166  Q
    ||||||| ||||||||||||||   ||||||||  ||||||||||| || |||||||| |||||||||||   ||  |||||||| ||||||||||||||    
T  48902635 gatcagatataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccggcaaccactgcaaaatttggatgatcaattcatgagg 48902536  T
Q  167 aagatacggc 176  Q
     |||||||||    
T  48902535 tagatacggc 48902526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 48735649 - 48735776
Alignment:
Q  11 aattctaggagtgtgcattgtggtggtgagttgaaaatgtgaatttgcaaaattgggatca---gagataagagaaaaccatagcttacaaatgcatttg 107  Q
    ||||||| |||||||  || ||| ||| | || ||||||||||||||||||||  | ||||   |||||||||||||||||   ||||||||  ||||||    
T  48735649 aattctacgagtgtgggttatggcggtaatttcaaaatgtgaatttgcaaaatcagtatcacaggagataagagaaaaccaagacttacaaacacatttg 48735748  T
Q  108 aaacgtataagagacttcaccggcaacc 135  Q
    ||||| ||||||||||||||||| ||||    
T  48735749 aaacgaataagagacttcaccggtaacc 48735776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 48875563 - 48875474
Alignment:
Q  35 ggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagactt 124  Q
    ||||||||||||||||||||||| ||||| ||| || ||||| |||||||||||   ||| |||| |||||||||||| || ||||||||    
T  48875563 ggtgagttgaaaatgtgaatttgtaaaatggggttcggagatgagagaaaaccaagacttgcaaacgcatttgaaacgaattagagactt 48875474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 172
Target Start/End: Original strand, 49048977 - 49049095
Alignment:
Q  52 aatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatcaggatttggat 151  Q
    |||||||||||| ||  | |||||||||||||||||||| ||||||||  || |||||||||| ||||||| ||||| ||||||    ||| ||| ||||    
T  49048977 aatttgcaaaatgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcaccagcaacc--tgcagaattaggat 49049074  T
Q  152 aatcaattcatgaggaagata 172  Q
    |||||| |||||||| |||||    
T  49049075 aatcaagtcatgaggcagata 49049095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 37827359 - 37827447
Alignment:
Q  39 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcac 127  Q
    ||||||||||||||||||||||| | ||||| ||| |||||||  ||||||  |||||||| |||| | |||| |||||||||||||||    
T  37827359 agttgaaaatgtgaatttgcaaagtcgggattagatataagagttaaccatgacttacaaacgcatgtaaaacttataagagacttcac 37827447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 135
Target Start/End: Complemental strand, 50668756 - 50668660
Alignment:
Q  39 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaacc 135  Q
    |||| |||||| ||||| ||||||||| |||| ||||| |||||||||||    ||||||| ||| ||||||||||||||| | ||||| |||||||    
T  50668756 agttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacc 50668660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 206 - 241
Target Start/End: Complemental strand, 7907865 - 7907830
Alignment:
Q  206 ctctaccatcttgtaaaccctaattttacaggaagg 241  Q
    ||||||||||||||||||||||||||||||||||||    
T  7907865 ctctaccatcttgtaaaccctaattttacaggaagg 7907830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 47207672 - 47207513
Alignment:
Q  14 tctaggagtgtgcattgtggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgt 113  Q
    |||| |||||||  || ||||||| |||| |||||||||||| | |||||  || || ||||| |||||||| ||   ||| ||||  |  || ||||||    
T  47207672 tctatgagtgtgtgttttggtggtaagttcaaaatgtgaattagaaaaatgtgggtcggagatgagagaaaatcaagacttccaaacactcttaaaacgt 47207573  T
Q  114 ataagagacttcaccggcaaccaaatcaggatttggataatcaattcatgaggaagatac 173  Q
    ||||||||||||||||| ||| | |  ||||||  ||| |||||||||||||||||||||    
T  47207572 ataagagacttcaccggtaactataataggattaagatgatcaattcatgaggaagatac 47207513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 45 - 162
Target Start/End: Original strand, 45385158 - 45385275
Alignment:
Q  45 aaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatcagga 144  Q
    |||||||||| |||||| | || ||| ||||  |||||||||||   |||||||| | ||||||||||||| |||||||| || || ||||  |  ||||    
T  45385158 aaatgtgaatatgcaaagtgggtatcggagacgagagaaaaccaagacttacaaacggatttgaaacgtatgagagacttaactggtaaccttagtagga 45385257  T
Q  145 tttggataatcaattcat 162  Q
    ||||||| ||||||||||    
T  45385258 tttggatcatcaattcat 45385275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 35 - 127
Target Start/End: Original strand, 48148043 - 48148138
Alignment:
Q  35 ggtgagttgaaaatgtgaatttgcaaaattgggatca---gagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcac 127  Q
    |||||||| ||||||||||||||| || |  ||||||   |||||||||||||||||   |||||| |  ||||||||||| ||||||||||||||    
T  48148043 ggtgagttcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatttgaaacgaataagagacttcac 48148138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 41 - 129
Target Start/End: Original strand, 48170953 - 48171044
Alignment:
Q  41 ttgaaaatgtgaatttgcaaaattgggatca---gagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccg 129  Q
    ||||||||| ||||||||||| |  ||||||   |||||||||| ||||||   ||||||||  ||||||||||||| ||||||||||||||    
T  48170953 ttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaaacacatttgaaacgtagaagagacttcaccg 48171044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 50251166 - 50251222
Alignment:
Q  32 ggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaacca 88  Q
    |||||| |||||||||||  |||||||| | | ||||||||||||||||||||||||    
T  50251166 ggtggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaacca 50251222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 48898438 - 48898347
Alignment:
Q  39 agttgaaaatgtgaatttgcaaaattgggatc---agagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcac 127  Q
    ||||||||||||||||||||||| | || |||   ||||||||| || |||||   ||||||||  || ||||||||| |||||||||||||    
T  48898438 agttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcac 48898347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 12195006 - 12194881
Alignment:
Q  47 atgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatcaggatt 146  Q
    ||||||||||||||| |  ||||||||||||||||| ||||||  |||||||||||||||||||| || ||||||||||||||||||||  | |||||||    
T  12195006 atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatt 12194907  T
Q  147 tggataatcaattcatgaggaagata 172  Q
    || || || ||||||  |||||||||    
T  12194906 tgaatgattaattcagaaggaagata 12194881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 12439434 - 12439309
Alignment:
Q  47 atgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatcaggatt 146  Q
    ||||||||||||||| |  ||||||||||||||||| ||||||  |||||||||||||||||||| || ||||||||||||||||||||  | |||||||    
T  12439434 atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatt 12439335  T
Q  147 tggataatcaattcatgaggaagata 172  Q
    || || || ||||||  |||||||||    
T  12439334 tgaatgattaattcagaaggaagata 12439309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 15348603 - 15348479
Alignment:
Q  11 aattctaggagtgtgcattgtggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaa 110  Q
    ||||||| |||||||  ||| || ||| | |||||||||||||||||| || |  |||||||||||||||||||||||   |||||||| ||||||||||    
T  15348603 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 15348504  T
Q  111 cgtataagagacttcaccggcaacc 135  Q
    |||||||||||||||||||| ||||    
T  15348503 cgtataagagacttcaccggtaacc 15348479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 51 - 173
Target Start/End: Complemental strand, 12200008 - 12199886
Alignment:
Q  51 gaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatcaggatttgga 150  Q
    ||||||||||| |  ||||||||||||||||||||||||  ||||||||  |||||||||| || ||||||||||||||||||||  | ||||||||| |    
T  12200008 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 12199909  T
Q  151 taatcaattcatgaggaagatac 173  Q
    | || ||||||| ||||| ||||    
T  12199908 tgattaattcataaggaatatac 12199886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 51 - 173
Target Start/End: Complemental strand, 12444436 - 12444314
Alignment:
Q  51 gaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatcaggatttgga 150  Q
    ||||||||||| |  ||||||||||||||||||||||||  ||||||||  |||||||||| || ||||||||||||||||||||  | ||||||||| |    
T  12444436 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 12444337  T
Q  151 taatcaattcatgaggaagatac 173  Q
    | || ||||||| ||||| ||||    
T  12444336 tgattaattcataaggaatatac 12444314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 4032283 - 4032368
Alignment:
Q  41 ttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttca 126  Q
    ||||||||| ||||||||||| |  |||||||| |||||||  |||||    |||||||  || ||||||||||||||||||||||    
T  4032283 ttgaaaatgcgaatttgcaaagtgaggatcagatataagagttaaccaagatttacaaacacacttgaaacgtataagagacttca 4032368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 478 - 583
Target Start/End: Original strand, 17782561 - 17782664
Alignment:
Q  478 tttaacttttaaatgtgcaaaatataaaatggatatataaaactagtgggaaatctatgcattgttaattctgaaagagatacattaagcatttttcaaa 577  Q
    |||||||||||| |||| ||||  |||||||||||| ||||| |||||||||||||||||||||||| |||||||  |||| |||||| |||||||||||    
T  17782561 tttaacttttaattgtgaaaaacttaaaatggatatgtaaaattagtgggaaatctatgcattgttagttctgaa--agatgcattaaacatttttcaaa 17782658  T
Q  578 acctca 583  Q
    ||||||    
T  17782659 acctca 17782664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 24309890 - 24309799
Alignment:
Q  39 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccgg 130  Q
    ||||||||||||||||||||||| |  | ||||||||||||||||||||||| |||||||| | |||||||||| ||||||||||| |||||    
T  24309890 agttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccgg 24309799  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 135
Target Start/End: Complemental strand, 24322171 - 24322079
Alignment:
Q  43 gaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaacc 135  Q
    |||| |||||||||||||||   ||||  |||||||||||||||||   |||||||| |||||||||||| ||||||||||||||| ||||||    
T  24322171 gaaactgtgaatttgcaaaacgaggatttgagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcaccagcaacc 24322079  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 41 - 172
Target Start/End: Complemental strand, 24340125 - 24339994
Alignment:
Q  41 ttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatc 140  Q
    |||||| |||||||||||||| |    |||||||||||| |||||||||  ||||||||   |||||||||| ||||||||||| ||||| ||||  |      
T  24340125 ttgaaagtgtgaatttgcaaagtgattatcagagataagtgaaaaccatgacttacaaacagatttgaaacgaataagagacttaaccggtaaccttact 24340026  T
Q  141 aggatttggataatcaattcatgaggaagata 172  Q
    | ||||| | | |||||||||| |||||||||    
T  24340025 aagattttggtgatcaattcatcaggaagata 24339994  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 24415546 - 24415417
Alignment:
Q  42 tgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatca 141  Q
    ||||| ||||||||||||||| ||| ||  || ||||||||||||||   ||||| || |||||||||||| ||||||||||| ||||| || |  |  |    
T  24415546 tgaaactgtgaatttgcaaaactgg-atttgaaataagagaaaaccaagacttacgaacgcatttgaaacgaataagagacttaaccggtaatctcaata 24415448  T
Q  142 ggatttggataatcaattcatgaggaagata 172  Q
    |||||||| | |||||||||| ||| |||||    
T  24415447 ggatttgggtgatcaattcatcaggcagata 24415417  T

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Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 29712806 - 29712925
Alignment:
Q  11 aattctaggagtgtgcattgtggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaa 110  Q
    ||||||||||| |||  || ||| ||| |||||||||||||||||||| ||||  |  | |||||||||||||||||||| |||||||| ||| ||||||    
T  29712806 aattctaggagcgtgtgttttggcggtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaa 29712905  T
Q  111 cgtataagagacttcaccgg 130  Q
    || |||||||||||||||||    
T  29712906 cgaataagagacttcaccgg 29712925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 32 - 124
Target Start/End: Complemental strand, 29695872 - 29695780
Alignment:
Q  32 ggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagactt 124  Q
    |||||| ||||||||||||||||||||||| |  || | ||| |||||||| ||||||| |||||||| |||||||||||| |||||||||||    
T  29695872 ggtggtaagttgaaaatgtgaatttgcaaagtgaggttgagatataagagataaccataacttacaaacgcatttgaaacgaataagagactt 29695780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 1812138 - 1812050
Alignment:
Q  39 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcac 127  Q
    |||||||||||  |||||||||| | |||||  ||||||||||||||||||| ||||||||  |||||| ||||||| ||| |||||||    
T  1812138 agttgaaaatgataatttgcaaagtggggatttgagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcac 1812050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 166
Target Start/End: Complemental strand, 178739 - 178605
Alignment:
Q  35 ggtgagttgaaaatgtgaatttgcaaaattgggatca---gagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggc 131  Q
    ||||||||||||||| |||  |||||||| || ||||   ||||| ||||| |||||   ||||||||  ||||||||||| ||||||||||| || ||     
T  178739 ggtgagttgaaaatgggaaagtgcaaaatgggtatcattggagatgagagataaccaagacttacaaacacatttgaaacgaataagagacttaactggt 178640  T
Q  132 aaccaaatcaggatttggataatcaattcatgagg 166  Q
    || | ||  ||||||||||| ||||||||| ||||    
T  178639 aagcgaagtaggatttggatgatcaattcaagagg 178605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 42562728 - 42562787
Alignment:
Q  71 agagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccgg 130  Q
    |||||| |||||||||||   |||||||| |||||||||||| |||||||| ||||||||    
T  42562728 agagattagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccgg 42562787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 29687764 - 29687676
Alignment:
Q  39 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcac 127  Q
    ||||||||||| ||||||||||| |  || | ||| || |||||||||||   ||||||||  || ||||| |||||||||||||||||    
T  29687764 agttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcac 29687676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 39 - 166
Target Start/End: Original strand, 11024902 - 11025029
Alignment:
Q  39 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaa 138  Q
    |||| |||||| || |||||||| ||  |||||||||||||||  ||||||  |||||||| ||||||||||||||| |||||||||||||| ||||  |    
T  11024902 agttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctca 11025001  T
Q  139 tcaggatttggataatcaattcatgagg 166  Q
     || |||||| || ||||||||||||||    
T  11025002 acatgatttgtatgatcaattcatgagg 11025029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 66 - 173
Target Start/End: Original strand, 47452299 - 47452406
Alignment:
Q  66 ggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatcaggatttggataatcaattcatgag 165  Q
    ||||||||||||||||||||||||  |||| ||||||| ||||| |||| ||||||||||||||||||||  | || ||| ||||| ||||||||| |||    
T  47452299 ggatcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaccaagatctggattatcaattcaagag 47452398  T
Q  166 gaagatac 173  Q
    | ||||||    
T  47452399 gtagatac 47452406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 39 - 173
Target Start/End: Original strand, 11015890 - 11016024
Alignment:
Q  39 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaa 138  Q
    |||| |||||| || |||||||| ||  |||||||||||||||  ||| ||  |||||||| ||||||||||||||| |||||||||||||| ||||  |    
T  11015890 agttcaaaatgcgattttgcaaagttatgatcagagataagagctaacaatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctca 11015989  T
Q  139 tcaggatttggataatcaattcatgaggaagatac 173  Q
     || |||||| || |||||||||||||| ||||||    
T  11015990 acatgatttgtattatcaattcatgaggcagatac 11016024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 173
Target Start/End: Original strand, 11006332 - 11006461
Alignment:
Q  44 aaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatcagg 143  Q
    |||||| || |||||||| |  ||||||||||||||||  ||||||  ||||||||  || |||||||||||||| ||||||||||||||||  | || |    
T  11006332 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 11006431  T
Q  144 atttggataatcaattcatgaggaagatac 173  Q
    ||||| || |||||||||||||| ||||||    
T  11006432 atttgtatgatcaattcatgaggcagatac 11006461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 39 - 124
Target Start/End: Complemental strand, 11975 - 11890
Alignment:
Q  39 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagactt 124  Q
    ||||||||||||||||||||||| |    ||||||||||||||||||||||  |||||||| | |||||||||| |||||||||||    
T  11975 agttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagactt 11890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 173
Target Start/End: Complemental strand, 21015484 - 21015355
Alignment:
Q  44 aaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatcagg 143  Q
    |||||||||| ||||||| | ||  | |||||||||||||||| ||| ||||||||  || |||||||||| ||||||| | ||||| ||||  | ||      
T  21015484 aaaatgtgaaattgcaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctcaacaaa 21015385  T
Q  144 atttggataatcaattcatgaggaagatac 173  Q
    ||| |||| |||||||| ||||| ||||||    
T  21015384 attaggatgatcaattcttgaggcagatac 21015355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 173
Target Start/End: Original strand, 21980014 - 21980143
Alignment:
Q  44 aaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatcagg 143  Q
    |||||||||||| ||||| ||||||| |||||| |||||||||||   ||||||||  || |||||||||   |||||||| || ||  |||  | ||||    
T  21980014 aaaatgtgaattcgcaaagttgggatgagagatgagagaaaaccaagacttacaaacacacttgaaacgtgagagagactttactggttaccttagcagg 21980113  T
Q  144 atttggataatcaattcatgaggaagatac 173  Q
    |||| ||| |||| ||||||||| ||||||    
T  21980114 atttcgattatcagttcatgaggcagatac 21980143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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