View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15453_low_5 (Length: 569)

Name: NF15453_low_5
Description: NF15453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15453_low_5
NF15453_low_5
[»] chr4 (7 HSPs)
chr4 (19-553)||(24065128-24065660)
chr4 (457-541)||(30251438-30251522)
chr4 (487-554)||(48309650-48309717)
chr4 (457-535)||(23012387-23012465)
chr4 (467-550)||(45068156-45068239)
chr4 (502-548)||(50655108-50655154)
chr4 (502-546)||(4866794-4866838)
[»] chr1 (8 HSPs)
chr1 (457-554)||(21926589-21926685)
chr1 (486-551)||(25410603-25410668)
chr1 (471-554)||(51871187-51871270)
chr1 (457-535)||(44504001-44504079)
chr1 (488-551)||(13297595-13297658)
chr1 (476-551)||(52372659-52372734)
chr1 (455-548)||(9644339-9644432)
chr1 (461-548)||(40799625-40799712)
[»] chr3 (7 HSPs)
chr3 (457-548)||(34213118-34213209)
chr3 (457-551)||(26982061-26982155)
chr3 (487-545)||(2833336-2833394)
chr3 (487-554)||(1045399-1045466)
chr3 (472-551)||(4778017-4778096)
chr3 (493-534)||(1762039-1762080)
chr3 (487-551)||(41640824-41640888)
[»] chr2 (4 HSPs)
chr2 (487-554)||(10994432-10994499)
chr2 (487-554)||(29682701-29682768)
chr2 (460-546)||(41074597-41074683)
chr2 (488-551)||(43411515-43411578)
[»] chr7 (6 HSPs)
chr7 (457-525)||(23176958-23177026)
chr7 (476-547)||(46028474-46028545)
chr7 (472-548)||(26557857-26557933)
chr7 (476-548)||(33888605-33888677)
chr7 (472-535)||(12258360-12258423)
chr7 (486-548)||(40188220-40188282)
[»] chr5 (3 HSPs)
chr5 (483-551)||(41650521-41650589)
chr5 (486-548)||(27639482-27639544)
chr5 (460-530)||(3465354-3465424)
[»] chr8 (8 HSPs)
chr8 (486-551)||(42032732-42032797)
chr8 (460-535)||(41926993-41927068)
chr8 (460-551)||(42241259-42241350)
chr8 (461-547)||(24604811-24604897)
chr8 (461-554)||(2074830-2074923)
chr8 (472-525)||(7656857-7656910)
chr8 (474-534)||(34152066-34152126)
chr8 (487-551)||(36650460-36650524)
[»] scaffold0042 (1 HSPs)
scaffold0042 (488-548)||(83251-83311)
[»] chr6 (2 HSPs)
chr6 (487-554)||(9755692-9755759)
chr6 (455-548)||(51962-52055)
[»] scaffold0329 (1 HSPs)
scaffold0329 (485-551)||(18456-18522)


Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 19 - 553
Target Start/End: Complemental strand, 24065660 - 24065128
Alignment:
Q  19 cattattcagcagaatgcacatggttaaatgaatcaaatttgacactaatcagcaatatggttgacatagtcaaaaggtgtttttgaattagaaaatcat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24065660 cattattcagcagaatgcacatggttaaatgaatcaaatttgacactaatcagcaatatggttgacatagtcaaaaggtgtgtttgaattagaaaatcat 24065561  T
Q  119 gatgtgtaactttaattatagtagtaagtgtttcatgatctatatcttattgtatgaatgtgactcttgtttgtcaattgtcattgaaggatatatacat 218  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24065560 gatgtgtaactttaattatagtagta-gtgtttcatgatctatatcctattgtatgaatgtgactcttgtttgtcaattgtcattgaaggatatatacat 24065462  T
Q  219 gatatgatgcaaaagaagacaatatattccttaaacaatgattaatttccatctcaccgttttcttcattatgaaattaacattaattgtgacaaaggag 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24065461 gatatgatgcaaaagaagacaatatattccttaaacaatgattaatttccatctcaccgttttcttcattatgaaattaacattaattgtgacaaaggag 24065362  T
Q  319 gggggataattaattggcaagtggttagtaatctttgtgttcatcaaagaatttgctnnnnnnnntaatgtttatcaaagaaattgagtttattattgta 418  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||        ||||||||| |||||||||||||||||||||||||    
T  24065361 gggggataattaattggcaagtggttagtaatctttgtg-tcaccaaagaatttgctaaaaaaaataatgtttaccaaagaaattgagtttattattgta 24065263  T
Q  419 aaataaaatgagtttattgttttaagaaataatttttcttctctggtggcactctccgtgaggagtatgtggtggatagagtgaaactcttagcctggaa 518  Q
    ||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||| |||||||  ||||||||||||||||||||||||| |||||||    
T  24065262 aaataaaataagtttattgttttaagaaataatttttcttcttcggtggcactctccatgaggagcctgtggtggatagagtgaaactcttaacctggaa 24065163  T
Q  519 gtggttcatggctaagtaccctgctagttcctgtt 553  Q
    |||||||||||||||||||||||||||||||||||    
T  24065162 gtggttcatggctaagtaccctgctagttcctgtt 24065128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 457 - 541
Target Start/End: Complemental strand, 30251522 - 30251438
Alignment:
Q  457 ttctctggtggcactctccgtgaggagtatgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctg 541  Q
    ||||||| |||  ||||||||||||||| |||||||||||||||||||||||| || || ||||||||| ||||||||| |||||    
T  30251522 ttctctgttggggctctccgtgaggagtctgtggtggatagagtgaaactcttggcttgaaagtggttcctggctaagtgccctg 30251438  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 487 - 554
Target Start/End: Complemental strand, 48309717 - 48309650
Alignment:
Q  487 gtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttcctgttc 554  Q
    |||||||||||||||||||||||||| ||||||| ||||  ||||||||  |||||||||||||||||    
T  48309717 gtggtggatagagtgaaactcttagcttggaagtcgttccgggctaagtttcctgctagttcctgttc 48309650  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 457 - 535
Target Start/End: Complemental strand, 23012465 - 23012387
Alignment:
Q  457 ttctctggtggcactctccgtgaggagtatgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagt 535  Q
    |||||||||||  ||||| ||||||||   |||||||||||||||||||||||||  ||||| ||||||||||||||||    
T  23012465 ttctctggtggtgctctctgtgaggagcccgtggtggatagagtgaaactcttagtttggaattggttcatggctaagt 23012387  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 467 - 550
Target Start/End: Complemental strand, 45068239 - 45068156
Alignment:
Q  467 gcactctccgtgaggagtatgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttcct 550  Q
    ||||||| | |||||||  ||| ||||||||||  ||||||||||| |||||||||||| ||||||||| |||||  |||||||    
T  45068239 gcactcttcatgaggagcctgtagtggatagagctaaactcttagcttggaagtggttcctggctaagtgccctggcagttcct 45068156  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 502 - 548
Target Start/End: Complemental strand, 50655154 - 50655108
Alignment:
Q  502 aaactcttagcctggaagtggttcatggctaagtaccctgctagttc 548  Q
    ||||||||||| |||||||||||| |||||||||  |||||||||||    
T  50655154 aaactcttagcttggaagtggttcctggctaagtgtcctgctagttc 50655108  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 502 - 546
Target Start/End: Original strand, 4866794 - 4866838
Alignment:
Q  502 aaactcttagcctggaagtggttcatggctaagtaccctgctagt 546  Q
    ||||||||||| |||||||||||| ||||||||| || |||||||    
T  4866794 aaactcttagcttggaagtggttcctggctaagtgccttgctagt 4866838  T

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Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 457 - 554
Target Start/End: Original strand, 21926589 - 21926685
Alignment:
Q  457 ttctctggtggcactctccgtgaggagtatgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttcctgttc 554  Q
    |||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||    
T  21926589 ttctctggtggcactccctgtgaggagtctgtggtggatagagtgaaactcttagcctggaagtggttc-tggctaagtgccctgctagttcatgttc 21926685  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 486 - 551
Target Start/End: Complemental strand, 25410668 - 25410603
Alignment:
Q  486 tgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttcctg 551  Q
    |||| |||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||    
T  25410668 tgtgatggatagagtgaaactcttagcttggaagtggttcctggctaagtaccttgctagttcctg 25410603  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 471 - 554
Target Start/End: Original strand, 51871187 - 51871270
Alignment:
Q  471 tctccgtgaggagtatgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttcctgttc 554  Q
    |||||||||||||   |||||||||||| | ||||||||||| |||||||||||| || |||||| ||||||||||||||||||    
T  51871187 tctccgtgaggagccagtggtggatagaattaaactcttagcttggaagtggttcctgactaagtgccctgctagttcctgttc 51871270  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 457 - 535
Target Start/End: Complemental strand, 44504079 - 44504001
Alignment:
Q  457 ttctctggtggcactctccgtgaggagtatgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagt 535  Q
    |||||||||||| |||| |||||||||  ||||||||||| |||||| |||||||| ||||||||||||||| ||||||    
T  44504079 ttctctggtggcgctcttcgtgaggagcctgtggtggataaagtgaagctcttagcttggaagtggttcatgactaagt 44504001  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 488 - 551
Target Start/End: Original strand, 13297595 - 13297658
Alignment:
Q  488 tggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttcctg 551  Q
    ||||||||||||||||||||||||| || || ||||||||||||||||  ||||||||||||||    
T  13297595 tggtggatagagtgaaactcttagcttgaaattggttcatggctaagtgtcctgctagttcctg 13297658  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 476 - 551
Target Start/End: Original strand, 52372659 - 52372734
Alignment:
Q  476 gtgaggagtatgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttcctg 551  Q
    |||||| || |||||||||||||| |||||||||||| | |||||||||| |||||| || |||||||||||||||    
T  52372659 gtgaggggtctgtggtggatagagcgaaactcttagcttagaagtggttcctggctaggtgccctgctagttcctg 52372734  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 455 - 548
Target Start/End: Original strand, 9644339 - 9644432
Alignment:
Q  455 tcttctctggtggcactctccgtgaggagtatgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttc 548  Q
    |||||||||||||| ||||||||||||||  | |||||||||||| ||||||||| |  |||||||||||| | |||||||  ||| |||||||    
T  9644339 tcttctctggtggctctctccgtgaggagcctatggtggatagagcgaaactcttgggttggaagtggttcctagctaagtgtcctactagttc 9644432  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 461 - 548
Target Start/End: Original strand, 40799625 - 40799712
Alignment:
Q  461 ctggtggcactctccgtgaggagtatgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttc 548  Q
    |||||| | ||||||||||||||  |||||||||||||||||||||||| || || |||| |||| | ||||||| |  |||||||||    
T  40799625 ctggtgacgctctccgtgaggagcctgtggtggatagagtgaaactcttggcttgaaagttgttcctagctaagtgcattgctagttc 40799712  T

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Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 457 - 548
Target Start/End: Original strand, 34213118 - 34213209
Alignment:
Q  457 ttctctggtggcactctccgtgaggagtatgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttc 548  Q
    |||||||||||| |||||||||||||   ||| ||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||    
T  34213118 ttctctggtggcgctctccgtgaggaacctgttgtggatagagtgaaactcttagcttggaagtggttcatggctaagtgccatgctagttc 34213209  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 457 - 551
Target Start/End: Complemental strand, 26982155 - 26982061
Alignment:
Q  457 ttctctggtggcactctccgtgaggagtatgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttcctg 551  Q
    |||||||||||||| || |||||||||  ||||||||||||||| ||||||||||| |||||||||||| ||||||||| |||||| ||||||||    
T  26982155 ttctctggtggcacccttcgtgaggagcctgtggtggatagagtaaaactcttagcttggaagtggttcttggctaagtgccctgcaagttcctg 26982061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 487 - 545
Target Start/End: Complemental strand, 2833394 - 2833336
Alignment:
Q  487 gtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctag 545  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  2833394 gtggtagatagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctag 2833336  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 487 - 554
Target Start/End: Complemental strand, 1045466 - 1045399
Alignment:
Q  487 gtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttcctgttc 554  Q
    ||||||||||| || ||||||| ||| |||||||||||| ||||||||| |||||||||||| |||||    
T  1045466 gtggtggatagggttaaactctcagcttggaagtggttcctggctaagtgccctgctagttcttgttc 1045399  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 551
Target Start/End: Original strand, 4778017 - 4778096
Alignment:
Q  472 ctccgtgaggagtatgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttcctg 551  Q
    |||| |||||||  ||||||||||||||| ||||||||||  ||||||||||||  ||||| || |||||||||| ||||    
T  4778017 ctccatgaggagcctgtggtggatagagttaaactcttagtttggaagtggttccaggctaggtgccctgctagtccctg 4778096  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 493 - 534
Target Start/End: Complemental strand, 1762080 - 1762039
Alignment:
Q  493 gatagagtgaaactcttagcctggaagtggttcatggctaag 534  Q
    ||||||| |||||||||||| |||||||||||||||||||||    
T  1762080 gatagagcgaaactcttagcttggaagtggttcatggctaag 1762039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 487 - 551
Target Start/End: Original strand, 41640824 - 41640888
Alignment:
Q  487 gtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttcctg 551  Q
    |||||||| ||||| ||||||||| | |||||||||||   |||||||| |||||||||||||||    
T  41640824 gtggtggacagagttaaactcttaacttggaagtggtttcgggctaagtgccctgctagttcctg 41640888  T

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Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 487 - 554
Target Start/End: Original strand, 10994432 - 10994499
Alignment:
Q  487 gtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttcctgttc 554  Q
    |||||||||||||| ||||||||||| |||||||||||| ||||||||| ||||||||||||| ||||    
T  10994432 gtggtggatagagttaaactcttagcttggaagtggttcctggctaagtgccctgctagttcccgttc 10994499  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 487 - 554
Target Start/End: Original strand, 29682701 - 29682768
Alignment:
Q  487 gtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttcctgttc 554  Q
    |||||||||||||| ||||||||||| | ||||||||||  ||||||| ||||||||| | |||||||    
T  29682701 gtggtggatagagttaaactcttagcttagaagtggttccaggctaagcaccctgctaatccctgttc 29682768  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 546
Target Start/End: Complemental strand, 41074683 - 41074597
Alignment:
Q  460 tctggtggcactctccgtgaggagtatgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagt 546  Q
    |||||||||  |||| |||||||   ||||||||| | || |||||||||||| || ||||||||| ||||||||| ||||||||||    
T  41074683 tctggtggcgttctctgtgaggaaactgtggtggacaaagcgaaactcttagcttgaaagtggttcctggctaagtgccctgctagt 41074597  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 488 - 551
Target Start/End: Original strand, 43411515 - 43411578
Alignment:
Q  488 tggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttcctg 551  Q
    |||||||||||| |||||||||||| || ||||| ||| |||||||||  |||||||| |||||    
T  43411515 tggtggatagagcgaaactcttagcttgaaagtgtttcctggctaagtgtcctgctagctcctg 43411578  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 457 - 525
Target Start/End: Complemental strand, 23177026 - 23176958
Alignment:
Q  457 ttctctggtggcactctccgtgaggagtatgtggtggatagagtgaaactcttagcctggaagtggttc 525  Q
    |||||| ||||||||||||||||||||  ||||||| ||||||||||||||||||| |||||| |||||    
T  23177026 ttctctagtggcactctccgtgaggagcctgtggtgtatagagtgaaactcttagcttggaagcggttc 23176958  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 476 - 547
Target Start/End: Complemental strand, 46028545 - 46028474
Alignment:
Q  476 gtgaggagtatgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagtt 547  Q
    |||||| || |||||||||||||| |||||||||||| |||||||||||| |||||||||  ||||||||||    
T  46028545 gtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgtcctgctagtt 46028474  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 472 - 548
Target Start/End: Complemental strand, 26557933 - 26557857
Alignment:
Q  472 ctccgtgaggagtatgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttc 548  Q
    ||||||||||||  ||||||||| ||||| ||||| ||||| ||| ||||| || ||||||||| ||||||||||||    
T  26557933 ctccgtgaggagcctgtggtggacagagttaaacttttagcttggtagtggctcctggctaagtgccctgctagttc 26557857  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 548
Target Start/End: Original strand, 33888605 - 33888677
Alignment:
Q  476 gtgaggagtatgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttc 548  Q
    |||||||||  ||||||||||||||| |||||||||  |||||||||||   |||||||| ||||||||||||    
T  33888605 gtgaggagtcagtggtggatagagtggaactcttagattggaagtggtttcgggctaagtgccctgctagttc 33888677  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 535
Target Start/End: Original strand, 12258360 - 12258423
Alignment:
Q  472 ctccgtgaggagtatgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagt 535  Q
    |||||||||||   | ||||||||||||| ||||||||||| || ||||||||| |||||||||    
T  12258360 ctccgtgaggaacttatggtggatagagttaaactcttagcttgaaagtggttcctggctaagt 12258423  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 548
Target Start/End: Complemental strand, 40188282 - 40188220
Alignment:
Q  486 tgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttc 548  Q
    ||||||||||| ||  |||||| |||| |||||||||||| || |||||| ||||||||||||    
T  40188282 tgtggtggataaagcaaaactcatagcttggaagtggttcttgcctaagtgccctgctagttc 40188220  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 483 - 551
Target Start/End: Original strand, 41650521 - 41650589
Alignment:
Q  483 gtatgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttcctg 551  Q
    ||||||||||||||||| |||||||||||| |||||||||||| ||||||||| | ||||||| |||||    
T  41650521 gtatgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgctctgctagctcctg 41650589  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 548
Target Start/End: Complemental strand, 27639544 - 27639482
Alignment:
Q  486 tgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttc 548  Q
    ||||||||||||||  ||| ||||||| |||||||||||||||||||| |  |||||||||||    
T  27639544 tgtggtggatagagcaaaattcttagcttggaagtggttcatggctaaatgtcctgctagttc 27639482  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 530
Target Start/End: Complemental strand, 3465424 - 3465354
Alignment:
Q  460 tctggtggcactctccgtgaggagtatgtggtggatagagtgaaactcttagcctggaagtggttcatggc 530  Q
    |||||||||||  | || ||||||| | |||||||||||| |||||||||||| |||||||| ||| ||||    
T  3465424 tctggtggcacctttcgagaggagtctttggtggatagagcgaaactcttagcttggaagtgtttcttggc 3465354  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 486 - 551
Target Start/End: Original strand, 42032732 - 42032797
Alignment:
Q  486 tgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttcctg 551  Q
    ||||||| |||||| |||||||||||| |||||||||||| ||||||||| |||||||| ||||||    
T  42032732 tgtggtgaatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctacttcctg 42032797  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 460 - 535
Target Start/End: Original strand, 41926993 - 41927068
Alignment:
Q  460 tctggtggcactctccgtgaggagtatgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagt 535  Q
    ||||||||  |||| || ||||||  |||||||||||||| ||| |||||||| |||||||||||| |||||||||    
T  41926993 tctggtggtgctcttcgagaggagcctgtggtggatagagcgaatctcttagcttggaagtggttcctggctaagt 41927068  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 460 - 551
Target Start/End: Complemental strand, 42241350 - 42241259
Alignment:
Q  460 tctggtggcactctccgtgaggagtatgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttcctg 551  Q
    ||||||||| | ||||||||||||  | ||||||||| || |||||||||||| |||||||||||| |||| |||  | || ||||||||||    
T  42241350 tctggtggcgccctccgtgaggagcctttggtggataaagcgaaactcttagcttggaagtggttcctggcgaagcgctctactagttcctg 42241259  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 547
Target Start/End: Original strand, 24604811 - 24604897
Alignment:
Q  461 ctggtggcactctccgtgaggagtatgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagtt 547  Q
    ||||||| || ||||| ||||||   ||||||||||||| |||||||||||  || ||||||||| |||||||||  ||||||||||    
T  24604811 ctggtggtaccctccgagaggagctggtggtggatagagcgaaactcttagattgaaagtggttcttggctaagtggcctgctagtt 24604897  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 461 - 554
Target Start/End: Complemental strand, 2074923 - 2074830
Alignment:
Q  461 ctggtggcactctccgtgaggagtatgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttcctgttc 554  Q
    ||||||| | |||||| ||||||   |||||||||| ||| ||||||||||  | ||||| ||||  |||||||| ||||||||||||||||||    
T  2074923 ctggtggtattctccgagaggagccagtggtggatatagttaaactcttagttttgaagttgttccaggctaagtgccctgctagttcctgttc 2074830  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 525
Target Start/End: Complemental strand, 7656910 - 7656857
Alignment:
Q  472 ctccgtgaggagtatgtggtggatagagtgaaactcttagcctggaagtggttc 525  Q
    ||||||||||||  |||||||||||||||||||||||||   ||||||||||||    
T  7656910 ctccgtgaggagcctgtggtggatagagtgaaactcttaatttggaagtggttc 7656857  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 474 - 534
Target Start/End: Complemental strand, 34152126 - 34152066
Alignment:
Q  474 ccgtgaggagtatgtggtggatagagtgaaactcttagcctggaagtggttcatggctaag 534  Q
    ||||||||||  ||| ||||||||||  ||||||||||| |||||||||||| ||||||||    
T  34152126 ccgtgaggagcctgttgtggatagagctaaactcttagcttggaagtggttcctggctaag 34152066  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 487 - 551
Target Start/End: Complemental strand, 36650524 - 36650460
Alignment:
Q  487 gtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttcctg 551  Q
    |||||||| ||||| ||||||||||| ||| ||||||||  ||||||||  | ||||||||||||    
T  36650524 gtggtggacagagttaaactcttagcttgggagtggttccgggctaagtgtcttgctagttcctg 36650460  T

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Target: scaffold0042 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 488 - 548
Target Start/End: Complemental strand, 83311 - 83251
Alignment:
Q  488 tggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttc 548  Q
    ||||||||| ||| ||||||||||| ||||||||||||||| | ||||  |||||||||||    
T  83311 tggtggataaagtcaaactcttagcttggaagtggttcatgccgaagtgtcctgctagttc 83251  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 554
Target Start/End: Complemental strand, 9755759 - 9755692
Alignment:
Q  487 gtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttcctgttc 554  Q
    |||||||| | ||||||||||||||  |||||||||||   |||||||| |||||||||||| |||||    
T  9755759 gtggtggacaaagtgaaactcttagtttggaagtggtttcgggctaagtgccctgctagttcatgttc 9755692  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 548
Target Start/End: Original strand, 51962 - 52055
Alignment:
Q  455 tcttctctggtggcactctccgtgaggagtatgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttc 548  Q
    |||| ||||||||| | ||| | ||||||  | |||||||| |||  ||||||||||| |||||||||||| |||||||||  | |||||||||    
T  51962 tcttttctggtggctccctcagagaggagcctatggtggatcgagctaaactcttagcttggaagtggttcctggctaagtgtcttgctagttc 52055  T

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Target: scaffold0329 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 551
Target Start/End: Complemental strand, 18522 - 18456
Alignment:
Q  485 atgtggtggatagagtgaaactcttagcctggaagtggttcatggctaagtaccctgctagttcctg 551  Q
    ||||||||||||||| ||||||| |||  || ||||| |||  |||||||| |||||||||||||||    
T  18522 atgtggtggatagagcgaaactcatagtttgaaagtgattctgggctaagtgccctgctagttcctg 18456  T

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