View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15453_low_7 (Length: 515)
Name: NF15453_low_7
Description: NF15453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15453_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 10676078 - 10675751
Alignment:
| Q |
1 |
tgtacttttaagattttgagtacgcgaattttaaaacatagttagttattatatgtaaatcattaacacatatcgtaagaaagcatggcagcattttcct |
100 |
Q |
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| T |
10676078 |
tgtacttttaagattttgagtactcgaattttaaaacatagtta----ttatatgtaaatcattaacacatttcgtaagaaagcatggtagcattttcct |
10675983 |
T |
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| Q |
101 |
tgatattagtgcttcattgataaaataaaatgacacatagtttaagagattagtctatgtaataatgttaaatttttt-agggtgagttttgtcatttat |
199 |
Q |
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| T |
10675982 |
tgatattagtgctttattgataaaataaaatgacgcatagtttaagagattagtctatgtaataatgttaaatttttttagggagagttttgtcatttat |
10675883 |
T |
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| Q |
200 |
tacagtcttacccgattagagagattagtctttgcagttgcgcatagaggacattctgttcacacaaacaaaactaataatctttatctccttctcacac |
299 |
Q |
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| T |
10675882 |
tgcagtcttacccgattagagagattagtctttacagttgcgcatagaggacattccgttcacacaaacaaaactaacaatctttatccccttctcacac |
10675783 |
T |
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| Q |
300 |
acttgagttcactgaccacccacatgcatcgc |
331 |
Q |
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| T |
10675782 |
acttgagttcactgaccacccacatgcatcgc |
10675751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 363 - 515
Target Start/End: Complemental strand, 10675719 - 10675567
Alignment:
| Q |
363 |
acttgccatctatgttcttgttactattttgtgaagtggagaaagatgaagttgtaaaggaaattcacataggctttgtgctaagaagatgataagagag |
462 |
Q |
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| T |
10675719 |
acttgccatctatgttcttgtcactattttgtgaagtggagaaagatgaagttgtaaaggaaattcacataggctttgtgctaagaagatgataagagag |
10675620 |
T |
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| Q |
463 |
ttgcagagaagaggggcgctcaaagaaagagaaacatgtttcttgtggcaact |
515 |
Q |
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| T |
10675619 |
ttgcagagaagaggggcgctcaaagagagagaaacatgtttcttgtggcaact |
10675567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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