View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15453_low_8 (Length: 492)
Name: NF15453_low_8
Description: NF15453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15453_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 8 - 476
Target Start/End: Complemental strand, 35473774 - 35473306
Alignment:
| Q |
8 |
gattatactcattaacaacattattattaataatattgttgttgtgatcaaataatgggtttggaggaattgaaagaaattggttaatattattatcaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35473774 |
gattatactcattaacaacattattattaataatattgttgttgtgatcaaataatggatttggaggaattgaaagaagttggttaatattattatcaat |
35473675 |
T |
|
| Q |
108 |
gaagcaatcattgataaggtcagaaccaaagttagatattgcatcttcatgctcacctcgaattaaatcgataaattgatcaaagtttggatcatcgatg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
35473674 |
gaagcaatcattgataaggtcagaaccaaagttagatattgcatcttcatgctcacctcgaattaaatcgataaattgatcaaagtttggatcgtcaatg |
35473575 |
T |
|
| Q |
208 |
aagtcatgcagctcaaagttattggtgttgtctagtgatgagtccatggtggattaacttggatagagttgagaggtctaatagtaatataaatagaatt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35473574 |
aagtcatgcagctcaaagttattggtgttgtctagtgatgagtccatggtggattaacttggatagagttgagaggtctaatagtaatataaatagaatt |
35473475 |
T |
|
| Q |
308 |
tgttaacataattcttaattaatatatctagatagttttggtgtgaatggaataagataagtttcagttaatgtattgctctggtcgaggtccgttattt |
407 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35473474 |
tattaacataattcttaattaatatatctagatagttttggtgtgaatggaataagataagtttcagttaatgtattgctctggtcgaggtccgttattt |
35473375 |
T |
|
| Q |
408 |
taaatttgataattagttaattagttacctttcttgaaaaggtgatagataagttatctagattaaaat |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35473374 |
taaatttgataattagttaattagttacctttcttgaaaaggtgataaataagttatctagattaaaat |
35473306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University