View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15453_low_9 (Length: 472)
Name: NF15453_low_9
Description: NF15453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15453_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 13 - 454
Target Start/End: Complemental strand, 41946135 - 41945692
Alignment:
| Q |
13 |
aatatgattgaaaacttgtttttctttatttgatttgtgaacataaatcatttcatgtcattagttaagacgtgataatatattgaaatatttagtttta |
112 |
Q |
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| T |
41946135 |
aatatgattgaaaacttgtttttctttatttgatttgtgaacataaatcatttcatgtcgttagttaagacgtgataatatattgaaatatttagtttta |
41946036 |
T |
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| Q |
113 |
aaaagtgttaatgtaatgttttgtggatctnnnnnnntattcttagagagatcctgatgttggg-aaagagcacaattttctatagttatggcaaatggc |
211 |
Q |
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| T |
41946035 |
aaaagtgttaatgtaatgttttgtggatctaaaaaaatattcttagagagatcctgatgttggggaaagagcacaattttctatagttatggcaaatggc |
41945936 |
T |
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| Q |
212 |
tcttaatgaagcttttcaatcaattgtagaaaaagattagggtatatcgtggtcttggagttggaatcaaaccaacaagaggaaaacttttaagaaattt |
311 |
Q |
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| T |
41945935 |
tcttaatgaagcttttcaatcaattgtagaaaaagattagggtatatcgtggtcttggagttggaatcaaaccaacaagaggaaaacttttaagaaattt |
41945836 |
T |
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| Q |
312 |
aattttttgaaaatatgtgcttccaaggacaaagttcctaggaaagttcaaccacaaaattcagga-ttttttctatataatttcttcctcttcttcttc |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
41945835 |
aattttttgaaaatatgtgcttccaaggacaaagttcctaggaaagttcaaccacaaaattcatgatttttttctatataatttcttcctcttcttcttc |
41945736 |
T |
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| Q |
411 |
tcaactaaagagacacctcttggactcatatgtaagaacattat |
454 |
Q |
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| T |
41945735 |
tcaactaaagagacacctcttggactcatatgtaagaacattat |
41945692 |
T |
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