View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15454_high_13 (Length: 477)

Name: NF15454_high_13
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15454_high_13
NF15454_high_13
[»] chr1 (3 HSPs)
chr1 (8-477)||(29662099-29662568)
chr1 (86-288)||(33183432-33183633)
chr1 (8-83)||(33183914-33183989)


Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 8 - 477
Target Start/End: Original strand, 29662099 - 29662568
Alignment:
Q  8 aaatgaagcgtcctcaaaacaaattatggatggtgggcatgaaaaccaacatttgtttgcggtactgttctgtgattttagaatgttggcatcatcacct 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29662099 aaatgaagcgtcctcaaaacaaattatggatggtgggcatgaaaaccaacatttgtttgcggcactgttctgtgattttagaatgttggcatcatcacct 29662198  T
Q  108 tcaaggttttattactcactattgtgctgtcacacagtcataacttgctttaggtgcaaatatgttaacttaattggccaattcaatcgatgaaccaaga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29662199 tcaaggttttattactcactattgtgctgtcacacagtcataacttgctttaggtgcaaatatgttaacttaattggccaattcaatcgatgatccaaga 29662298  T
Q  208 atgtagacattgtccatctaaatcctaagtaatcaattcattttatagttatgcgaattaatcctatatcgataatagctaatgctcaatatgnnnnnnn 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  29662299 atgtagacattgtccatctaaatcctaagtaatcaattcattttatagttatgcgaattaatcctatatcgataatagctaatgctcaatatgttttttt 29662398  T
Q  308 aaaaattgaaatgcgcatcgggtaattcctgcattcgtaactccatgatttcccagtaaaatattgactgtggtgacattagttttcctacaatcaaaat 407  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29662399 aaaaattgaaatgcgcattgggtaattcctgcattcgtaactccatgatttcccagtaaaatattgactgtggtgacattagttttcctacaatcaaaat 29662498  T
Q  408 caatattgctctttgtgtgtttacttattagcatctactgtatactttgtatttcaagaatctatgttgc 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29662499 caatattgctctttgtgtgtttacttattagcatctactgtatactttgtatttcaagaatctatgttgc 29662568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 86 - 288
Target Start/End: Complemental strand, 33183633 - 33183432
Alignment:
Q  86 tagaatgttggcatcatcaccttcaaggtttta-ttactcactattgtgctgtcacacagtcataacttgctttaggtgcaaatatgtta----acttaa 180  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||| |||   |||||||||| | ||||||||||||||| ||||||    |||||     
T  33183633 tagaatgttggcatcatcaccttcaatgttttagttactcactattgtactg---cacagtcatagcatgctttaggtgcaaagatgttagttaactta- 33183538  T
Q  181 ttggccaattcaatcgatgaaccaagaatgtagacattgtccatctaaatcctaagtaatcaattcattttatagttatgcgaattaatcctatatcgat 280  Q
    || | |||||| || | ||  |||||||| ||||  |||||||||||||||||||||| ||||||| || ||  ||||||||||||||||||||||||||    
T  33183537 ttcgtcaattcgattgttggcccaagaatatagatgttgtccatctaaatcctaagtagtcaattcgttcta--gttatgcgaattaatcctatatcgat 33183440  T
Q  281 aatagcta 288  Q
    ||||||||    
T  33183439 aatagcta 33183432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 33183989 - 33183914
Alignment:
Q  8 aaatgaagcgtcctcaaaacaaattatggatggtgggcatgaaaaccaacatttgtttgcggtactgttctgtgat 83  Q
    ||||||||||||||||| | |  | |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33183989 aaatgaagcgtcctcaacaaagttaatggatggtgggcatgaaaaccaacatttgtttgcggtactgttctatgat 33183914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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