View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15454_high_15 (Length: 425)

Name: NF15454_high_15
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15454_high_15
NF15454_high_15
[»] chr2 (2 HSPs)
chr2 (15-372)||(1813035-1813404)
chr2 (376-413)||(1813014-1813051)
[»] chr5 (6 HSPs)
chr5 (259-413)||(19821452-19821606)
chr5 (287-413)||(33501699-33501825)
chr5 (259-372)||(5687846-5687960)
chr5 (358-413)||(9233055-9233110)
chr5 (289-340)||(29819766-29819817)
chr5 (288-338)||(9233102-9233152)
[»] chr1 (2 HSPs)
chr1 (287-413)||(30459397-30459523)
chr1 (319-374)||(40890929-40890984)
[»] chr3 (6 HSPs)
chr3 (289-372)||(54226972-54227053)
chr3 (289-372)||(54227721-54227804)
chr3 (292-410)||(32107980-32108097)
chr3 (287-342)||(24084991-24085046)
chr3 (377-410)||(39997824-39997857)
chr3 (379-413)||(54226951-54226985)
[»] chr8 (1 HSPs)
chr8 (288-348)||(103833-103893)
[»] chr4 (1 HSPs)
chr4 (286-344)||(54137796-54137854)


Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 15 - 372
Target Start/End: Complemental strand, 1813404 - 1813035
Alignment:
Q  15 catcaacaaggtcatccttcaagatgacaagaattgaacgagggatcgcaccaacacctagcacctgtgtactctcttggacttttatctcctgataatc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1813404 catcaacaaggtcatccttcaagatgacaagaattgaacgagggatcgcaccaacacctagcacctgtgtactctcttggacttttatctcctgataatc 1813305  T
Q  115 atggcacactatagtatcttttacatactcgaattttgtacctccacagggcttcggcctctgccgttaagaacaacaaacaaacataaccaaatgaaag 214  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1813304 atggcacactgtagtatcttttacatactcgaattttgtacctccacagggcttcggcctctgccattaagaacaacaaacaaacataaccaaatgaaag 1813205  T
Q  215 gggattctctgccaatttaagtaaacaaatatagtaaatcagatcagtgtagttagtatctcatgtatcccacga------------tacgatacgaaga 302  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||            |||||||||||||    
T  1813204 gggattctctgccaatttaagtaaacaaatatagtaaatcagctcagtgtagttagtatctcatgtatcccacgatacgtatcccgatacgatacgaaga 1813105  T
Q  303 cagccatgggcgatacgtatcagggtctgtatcccaaatgacattgcatcacaggtgtatcccatgtatc 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1813104 cagccatgggcgatacgtatcagggtctgtatcccaaatgacattgcatcccaggtgtatcccatgtatc 1813035  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 413
Target Start/End: Complemental strand, 1813051 - 1813014
Alignment:
Q  376 ggtgtatcccatgtatcctgattcaatctagtatccta 413  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1813051 ggtgtatcccatgtatcctgattcaatctagtatccta 1813014  T

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Target: chr5 (Bit Score: 111; Significance: 7e-56; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 259 - 413
Target Start/End: Complemental strand, 19821606 - 19821452
Alignment:
Q  259 cagtgtagttagtatctcatgtatcccacgatacgatacgaagacagccatgggcgatacgtatcagggtctgtatcccaaatgacattgcatcacaggt 358  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||     
T  19821606 cagtgtagttagtatcccatgtatcccacgatacgatacgaaaacagccatgggcgatacgtatcagggtctgtatcccaaatgacattgcatccccggc 19821507  T
Q  359 gtatcccatgtatcgtgggtgtatcccatgtatcctgattcaatctagtatccta 413  Q
    ||||| ||||||||| |||||||| |||||||| | |||||||||| ||||||||    
T  19821506 gtatctcatgtatcgcgggtgtatgccatgtataccgattcaatctggtatccta 19821452  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 287 - 413
Target Start/End: Original strand, 33501699 - 33501825
Alignment:
Q  287 cgatacgatacgaagacagccatgggcgatacgtatcagggtctgtatcccaaatgacattgcatcacaggtgtatcccatgtatcgtgggtgtatccca 386  Q
    ||||||||||| || ||||||||||||||||||||| | ||||||||||||||||||||||| |||  ||| |||||||||||||||  ||  ||||||     
T  33501699 cgatacgatacaaaaacagccatgggcgatacgtattacggtctgtatcccaaatgacattgtatcctaggcgtatcccatgtatcgctggcatatccct 33501798  T
Q  387 tgtatcctgattcaatctagtatccta 413  Q
     |||||| |||||||||||||||||||    
T  33501799 cgtatcccgattcaatctagtatccta 33501825  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 259 - 372
Target Start/End: Complemental strand, 5687960 - 5687846
Alignment:
Q  259 cagtgtagttagtatctcatgtat-cccacgatacgatacgaagacagccatgggcgatacgtatcagggtctgtatcccaaatgacattgcatcacagg 357  Q
    |||||||||||||||| || |||| ||| |||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||  ||| ||  ||||    
T  5687960 cagtgtagttagtatcccacgtatgcccgcgatacaatacgaaaacagccatgggggatacgtatcagggtctgtatcccaaatgatgttgtattgcagg 5687861  T
Q  358 tgtatcccatgtatc 372  Q
     ||||||||||||||    
T  5687860 cgtatcccatgtatc 5687846  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 358 - 413
Target Start/End: Complemental strand, 9233110 - 9233055
Alignment:
Q  358 tgtatcccatgtatcgtgggtgtatcccatgtatcctgattcaatctagtatccta 413  Q
    |||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||    
T  9233110 tgtatcccatgtatcgcgggcgtatcccatgtatcccgattcaatctagtatccta 9233055  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 289 - 340
Target Start/End: Complemental strand, 29819817 - 29819766
Alignment:
Q  289 atacgatacgaagacagccatgggcgatacgtatcagggtctgtatcccaaa 340  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  29819817 atacaatacgaaaacagccatgggcgatacgtatcagggtctgtatcccaaa 29819766  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 338
Target Start/End: Complemental strand, 9233152 - 9233102
Alignment:
Q  288 gatacgatacgaagacagccatgggcgatacgtatcagggtctgtatccca 338  Q
    ||||| ||||||| |||||||| ||||||||||||||| || |||||||||    
T  9233152 gatacaatacgaaaacagccattggcgatacgtatcagtgtttgtatccca 9233102  T

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Target: chr1 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 287 - 413
Target Start/End: Complemental strand, 30459523 - 30459397
Alignment:
Q  287 cgatacgatacgaagacagccatgggcgatacgtatcagggtctgtatcccaaatgacattgcatcacaggtgtatcccatgtatcgtgggtgtatccca 386  Q
    ||||| |||||||| |||||||||||| |||||||||||||||||| |||||||||| || | ||| |||| ||||||||||||||||||| ||||| ||    
T  30459523 cgataggatacgaatacagccatgggcaatacgtatcagggtctgtgtcccaaatgaaatagtatcccaggcgtatcccatgtatcgtgggcgtatcaca 30459424  T
Q  387 tgtatcctgattcaatctagtatccta 413  Q
    ||||||| |||||||||||||||||||    
T  30459423 tgtatcccgattcaatctagtatccta 30459397  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 374
Target Start/End: Complemental strand, 40890984 - 40890929
Alignment:
Q  319 gtatcagggtctgtatcccaaatgacattgcatcacaggtgtatcccatgtatcgt 374  Q
    |||||||||||| |||||||||||||  || |||| ||||||||||||||||||||    
T  40890984 gtatcagggtctatatcccaaatgaccatgtatcataggtgtatcccatgtatcgt 40890929  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 289 - 372
Target Start/End: Complemental strand, 54227053 - 54226972
Alignment:
Q  289 atacgatacgaagacagccatgggcgatacgtatcagggtctgtatcccaaatgacattgcatcacaggtgtatcccatgtatc 372  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||| |||  ||||||||||||||    
T  54227053 atacgatacgaa--cagccatgggcgatacgtatcagggtctgtatcccaaatgacattgtatcccagacgtatcccatgtatc 54226972  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 372
Target Start/End: Complemental strand, 54227804 - 54227721
Alignment:
Q  289 atacgatacgaagacagccatgggcgatacgtatcagggtctgtatcccaaatgacattgcatcacaggtgtatcccatgtatc 372  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||  || ||  |||| ||||||||||||||    
T  54227804 atacgatatgaaaacagccatgggcgatacgtatcagggtctgtatcccaaatgaccatgtatagcaggcgtatcccatgtatc 54227721  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 292 - 410
Target Start/End: Original strand, 32107980 - 32108097
Alignment:
Q  292 cgatacgaagacagccatgggcgatacgtatcagggtctgtatcccaaatgacattgcatcacaggtgtatcccatgtatcgtgggtgtatcccatgtat 391  Q
    ||||| ||| ||||||||||||||||||||||||||||||| |||| ||||||  || ||| |||| |||||||||||||||  || ||||  |||||||    
T  32107980 cgatatgaaaacagccatgggcgatacgtatcagggtctgtgtcccgaatgactatgtatcgcaggcgtatcccatgtatcgccggcgtat-tcatgtat 32108078  T
Q  392 cctgattcaatctagtatc 410  Q
    ||  |||||||||||||||    
T  32108079 cccaattcaatctagtatc 32108097  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 342
Target Start/End: Complemental strand, 24085046 - 24084991
Alignment:
Q  287 cgatacgatacgaagacagccatgggcgatacgtatcagggtctgtatcccaaatg 342  Q
    |||||||||| ||| ||||| |||| ||||| ||||||||||||||||||||||||    
T  24085046 cgatacgatatgaaaacagcaatggccgatatgtatcagggtctgtatcccaaatg 24084991  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 377 - 410
Target Start/End: Complemental strand, 39997857 - 39997824
Alignment:
Q  377 gtgtatcccatgtatcctgattcaatctagtatc 410  Q
    ||||||||||||||||||||||||||||||||||    
T  39997857 gtgtatcccatgtatcctgattcaatctagtatc 39997824  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 413
Target Start/End: Complemental strand, 54226985 - 54226951
Alignment:
Q  379 gtatcccatgtatcctgattcaatctagtatccta 413  Q
    ||||||||||||||| |||||||||||||||||||    
T  54226985 gtatcccatgtatcccgattcaatctagtatccta 54226951  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 288 - 348
Target Start/End: Complemental strand, 103893 - 103833
Alignment:
Q  288 gatacgatacgaagacagccatgggcgatacgtatcagggtctgtatcccaaatgacattg 348  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  103893 gatacgatatgaaaacagccatgggcgatacgtatcagggtctgtatcccaaatgacattg 103833  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 286 - 344
Target Start/End: Complemental strand, 54137854 - 54137796
Alignment:
Q  286 acgatacgatacgaagacagccatgggcgatacgtatcagggtctgtatcccaaatgac 344  Q
    ||||||||||||||| |||||||||||| |||| ||||||||| |||||| ||||||||    
T  54137854 acgatacgatacgaaaacagccatgggcaatacatatcagggtatgtatcgcaaatgac 54137796  T

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