View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15454_high_18 (Length: 413)
Name: NF15454_high_18
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15454_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 2 - 395
Target Start/End: Original strand, 39435896 - 39436286
Alignment:
| Q |
2 |
gtggagtagcataggcaaactagtggtttagtctaccaaacatgaaaatcgacaaaagtatgaggcttataaaccttcagccaccatcagaaatgaaatt |
101 |
Q |
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| T |
39435896 |
gtggagtaacctagacaaactagtgatttagtctaccaaatatgaaaatcgacaaaagtatgaggctta--aaccttaagccaccaccaggattgaaatt |
39435993 |
T |
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| Q |
102 |
tcaccatgttaacaatttcaatgatagctgannnnnnnnnnnnaaagctcctgtggttatgttccttccaaataatctaattactcgtcaaccaaatagt |
201 |
Q |
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| T |
39435994 |
tcaccatgttaacaatttcaatgatagctgattttttgtttttaaagctcctgcagttgtgttccttccaaataatccaattactcgtcaaccaaatagt |
39436093 |
T |
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| Q |
202 |
tggaagacaagtgcggatttcctttctcaaaagatggttgccaccttaagaaacattgacatcaaacctccatataatatttcaagatattttgtgagaa |
301 |
Q |
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| T |
39436094 |
tggaagacaagtgcggatgtcctttctaaaaagatggttgccaccttaagaaacattgacatcaaacctccatctaatatttcaagatattttgtgagaa |
39436193 |
T |
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| Q |
302 |
taattgcccacactaaaatatcaataatacacaaattaacacgatatttattttgtttataagacacttatattatttctaattagtgcgaggt |
395 |
Q |
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| T |
39436194 |
taattgcccacactaaaatatcaatagtacacaaattaacacgata-ttattttgtttataatacacttatattatttctaattagtgcgaggt |
39436286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 30687979 - 30687876
Alignment:
| Q |
25 |
tggtttagtctaccaaacatgaaaatcgacaaaagtatgaggcttataaaccttcagccaccatcagaaatgaaatttcaccatgttaacaatttcaatg |
124 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||||||| | ||| |||||||||| ||| ||||||||||||| |
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| T |
30687979 |
tggtttagtccaccagacatgaaaatcgacaaaagtatgagatttataaaccttaagccaccattatgaataaaatttcaccttgtcaacaatttcaatg |
30687880 |
T |
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| Q |
125 |
atag |
128 |
Q |
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|||| |
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| T |
30687879 |
atag |
30687876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 3093043 - 3092945
Alignment:
| Q |
28 |
tttagtctaccaaacatgaaaatcgacaaaagtatgaggcttataaaccttcagccaccatcagaaatgaaatttcaccatgttaacaatttcaatgat |
126 |
Q |
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||||||| ||| |||||||||||||||||||||||||| ||||||||||| |||||||| || |||| | ||||||| ||| |||||||||| |||| |
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| T |
3093043 |
tttagtccgccagacatgaaaatcgacaaaagtatgaggtttataaaccttaagccaccagcatgaatggattttcaccctgtcaacaatttcagtgat |
3092945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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