View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15454_high_20 (Length: 404)
Name: NF15454_high_20
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15454_high_20 |
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| [»] scaffold0238 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 239 - 397
Target Start/End: Original strand, 50447537 - 50447695
Alignment:
| Q |
239 |
tgtttaagcgggtaatgtgtgaattcccctctgtgaggagtacgtggtgtcccatgtttggcttacactcttcattttcacatcataatatgttgaggtg |
338 |
Q |
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| T |
50447537 |
tgtttaagcgggtaatgtgtgaattcccctctgtgaggagtacgtggtgtcccatgtttggcttacagtcttcattttcacatcataatatgttgaggtg |
50447636 |
T |
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| Q |
339 |
gccacatgttcgtagcttatctaccatatggcttcagtgctcatatatagtcgtctctg |
397 |
Q |
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| T |
50447637 |
gccacatgttcgtagcttatctaccatgtggcttcagtgctcatatatagtcgtttctg |
50447695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0238 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 13631 - 13703
Alignment:
| Q |
1 |
gtaatatagtattagaattatatatacagatgtaaatggcagtggtgtagtaaatatagtattagaattttgg |
73 |
Q |
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| T |
13631 |
gtaatatagtattagaattatatatacatatgtaaatggcagtggtgtagtaaatatagtattagaattttgg |
13703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0238; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 13603 - 13649
Alignment:
| Q |
22 |
atatacagatgtaaatggcagtggtgtagtaaatatagtattagaatt |
69 |
Q |
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| T |
13603 |
atatacagatgtaaatgacactggtgtagt-aatatagtattagaatt |
13649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 10453795 - 10453867
Alignment:
| Q |
1 |
gtaatatagtattagaattatatatacagatgtaaatggcagtggtgtagtaaatatagtattagaattttgg |
73 |
Q |
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| T |
10453795 |
gtaatatagtattagaattatatatacatatgtaaatggcagtggtgtagtaaatatagtattagaattttgg |
10453867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 10453766 - 10453813
Alignment:
| Q |
21 |
tatatacagatgtaaatggcagtggtgtagtaaatatagtattagaatt |
69 |
Q |
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| T |
10453766 |
tatatacagatgtaaatgacactggtgtagt-aatatagtattagaatt |
10453813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 12603311 - 12603240
Alignment:
| Q |
1 |
gtaatatagtattagaattatatatacagatgtaaatggcagtggtgtagtaaatatagtattagaattttg |
72 |
Q |
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| T |
12603311 |
gtaatatattattagaattatatatacagatgtaaatggcagtggtgtagtaaatatagtattagaattttg |
12603240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 12603345 - 12603293
Alignment:
| Q |
16 |
aattatatatacagatgtaaatggcagtggtgtagtaaatatagtattagaatt |
69 |
Q |
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|||| |||||||||||||||||| || ||||||||| |||||| |||||||||| |
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| T |
12603345 |
aattgtatatacagatgtaaatgacactggtgtagt-aatatattattagaatt |
12603293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 4740094 - 4740165
Alignment:
| Q |
1 |
gtaatatagtattagaattatatatacagatgtaaatggcagtggtgtagtaaatatagtattagaattttg |
72 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4740094 |
gtaatatagtattagaattatatattcatatgtaaatggcagtggtgtagtaaatatagtattagaattttg |
4740165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 4740065 - 4740112
Alignment:
| Q |
21 |
tatatacagatgtaaatggcagtggtgtagtaaatatagtattagaatt |
69 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
4740065 |
tatatacagatgtaaatgacagtggtgtagt-aatatagtattagaatt |
4740112 |
T |
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