View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15454_high_21 (Length: 400)

Name: NF15454_high_21
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15454_high_21
NF15454_high_21
[»] chr2 (1 HSPs)
chr2 (18-381)||(38743811-38744178)
[»] scaffold0009 (1 HSPs)
scaffold0009 (313-374)||(27225-27286)
[»] chr7 (4 HSPs)
chr7 (313-374)||(29059885-29059946)
chr7 (313-373)||(20207578-20207638)
chr7 (313-374)||(31492183-31492244)
chr7 (313-374)||(19477250-19477310)
[»] chr8 (3 HSPs)
chr8 (313-374)||(4125024-4125085)
chr8 (313-374)||(7839253-7839314)
chr8 (313-374)||(19715725-19715787)
[»] chr6 (2 HSPs)
chr6 (313-374)||(12836897-12836958)
chr6 (311-380)||(9536841-9536910)
[»] chr5 (2 HSPs)
chr5 (313-374)||(5123498-5123559)
chr5 (313-374)||(31113414-31113475)
[»] chr4 (4 HSPs)
chr4 (313-374)||(9012350-9012411)
chr4 (313-374)||(31307066-31307127)
chr4 (313-374)||(33529337-33529398)
chr4 (313-374)||(38766169-38766230)
[»] chr3 (4 HSPs)
chr3 (315-372)||(38331210-38331267)
chr3 (315-373)||(25224780-25224838)
chr3 (313-374)||(40294692-40294753)
chr3 (313-374)||(55123177-55123238)
[»] chr1 (1 HSPs)
chr1 (313-350)||(42297442-42297479)


Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 38744178 - 38743811
Alignment:
Q  18 acaagtttcatgcacacgtgaattatggaaagtttgttaagaattttttactnnnnnnntttctaacacctgtgttattatggtataactggaaacttgg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  38744178 acaagtttcatgcacacgtgaattatggaaagtttgttaagaattttttactaaaaaa-tttctaacacctgtgttattatggtataactggaaacttgg 38744080  T
Q  118 tactatgatgtcattatgagnnnnnnnnnnnn--gtagtgatggtgtcactgtgatttgttgtaatgatatattacttcataaaatggcgccactaatct 215  Q
    ||||||||||||||||||||              ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38744079 tactatgatgtcattatgagtttttttttttttggtagtgatggtgtcactatgatttgttgtaatgatatattacttcataaaatggcgccactaatct 38743980  T
Q  216 atttttagtgatttgatgagccaacaaaagttgatgtccatttttataaaaaggatcaaagagaatac-at--tgtgtgtacaccaagtatcctatatga 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||  |||||||||||||||||||||  | ||    
T  38743979 atttttagtgatttgatgagccaacaaaagttgatgtccatttttataaaaaggatcaaagagagtactattgtgtgtgtacaccaagtatcctccacga 38743880  T
Q  313 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccccaaaagt 381  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38743879 gcgcaactgcggagactaatccctaaagcattgtgagatccaaatgagcggcaagctctccccaaaagt 38743811  T

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Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 27225 - 27286
Alignment:
Q  313 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 374  Q
    ||||||||||| ||||||||||||  ||||| |||||||| ||||| |||||||||||||||    
T  27225 gcgcaactgcgaagactaatccctcgagcatcgtgagatccaaatgggcggcaagctctccc 27286  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 29059946 - 29059885
Alignment:
Q  313 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 374  Q
    |||||||||||||||||||||||| |||||||||| || | ||||| |||||| ||||||||    
T  29059946 gcgcaactgcggagactaatccctcaagcattgtgggacccaaatgggcggcaggctctccc 29059885  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 313 - 373
Target Start/End: Complemental strand, 20207638 - 20207578
Alignment:
Q  313 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctcc 373  Q
    ||||||||||||||||||||||||  ||||||||  |||| ||||| ||||||||||||||    
T  20207638 gcgcaactgcggagactaatccctcgagcattgtaggatccaaatgcgcggcaagctctcc 20207578  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 31492244 - 31492183
Alignment:
Q  313 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 374  Q
    ||||||||||||||||||||||||  ||||||||| || | ||||| |||||| ||||||||    
T  31492244 gcgcaactgcggagactaatccctcgagcattgtgggacctaaatgggcggcaggctctccc 31492183  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 19477250 - 19477310
Alignment:
Q  313 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 374  Q
    ||||||||||||||||||||||||  ||||||||| || | |||||  ||||||||||||||    
T  19477250 gcgcaactgcggagactaatccct-cagcattgtgggacccaaatggccggcaagctctccc 19477310  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 4125024 - 4125085
Alignment:
Q  313 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 374  Q
    ||||||||||||||||||||||||  ||||||||| || | ||||| |||||| ||||||||    
T  4125024 gcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccc 4125085  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 7839253 - 7839314
Alignment:
Q  313 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 374  Q
    ||||||||||||||||||||||||  ||||||||| || | ||||| |||||| ||||||||    
T  7839253 gcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcatgctctccc 7839314  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 19715725 - 19715787
Alignment:
Q  313 gcgcaactgcggagactaat-ccctaaagcattgtgagatcaaaatgagcggcaagctctccc 374  Q
    |||||||||||||||||||| ||||  ||||||||| || | ||||| |||||||||||||||    
T  19715725 gcgcaactgcggagactaatcccctcgagcattgtgggacccaaatgggcggcaagctctccc 19715787  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 12836897 - 12836958
Alignment:
Q  313 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 374  Q
    ||||||||| |||||||||||||| |||||||||| || | ||||| ||||| |||||||||    
T  12836897 gcgcaactggggagactaatccctcaagcattgtgggacccaaatgggcggcgagctctccc 12836958  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 380
Target Start/End: Complemental strand, 9536910 - 9536841
Alignment:
Q  311 gagcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccccaaaag 380  Q
    ||||||||||||||||||||||||||  |||||||||  ||| |||||  ||| | |||||||| |||||    
T  9536910 gagcgcaactgcggagactaatccctcgagcattgtggaatctaaatggacggtaggctctccctaaaag 9536841  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 5123498 - 5123559
Alignment:
Q  313 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 374  Q
    ||||||||||||||||||||||||  ||||||||| || | ||||| |||||| ||||||||    
T  5123498 gcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccc 5123559  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 31113475 - 31113414
Alignment:
Q  313 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 374  Q
    ||||||||||||||||||||||||  || |||||| |||| ||||| |||| | ||||||||    
T  31113475 gcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccc 31113414  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 9012411 - 9012350
Alignment:
Q  313 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 374  Q
    ||||||||||||||||||||||||  ||||||||| || | || || |||||||||||||||    
T  9012411 gcgcaactgcggagactaatccctcgagcattgtgggacccaagtgggcggcaagctctccc 9012350  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 31307066 - 31307127
Alignment:
Q  313 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 374  Q
    ||||||||||||||||||||||||  ||||||||| || | ||||| |||||| ||||||||    
T  31307066 gcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccc 31307127  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 33529398 - 33529337
Alignment:
Q  313 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 374  Q
    ||||||||||||||||||||||||  || |||||| || | ||||| |||||||||||||||    
T  33529398 gcgcaactgcggagactaatccctccagtattgtgggacccaaatgggcggcaagctctccc 33529337  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 38766230 - 38766169
Alignment:
Q  313 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 374  Q
    ||||||||||||||||||||||||  |||||||||||| | ||||| ||||||  |||||||    
T  38766230 gcgcaactgcggagactaatccctcgagcattgtgagacccaaatgggcggcagactctccc 38766169  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 372
Target Start/End: Complemental strand, 38331267 - 38331210
Alignment:
Q  315 gcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctc 372  Q
    |||||||||||||||||||||| || ||||||| || | ||||| |||||||||||||    
T  38331267 gcaactgcggagactaatccctcaaacattgtgggacccaaatgggcggcaagctctc 38331210  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 25224838 - 25224780
Alignment:
Q  315 gcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctcc 373  Q
    ||||||||||||||||||||||  ||||||||| || | ||||| |||||||| |||||    
T  25224838 gcaactgcggagactaatcccttgagcattgtgggacctaaatgggcggcaagttctcc 25224780  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 40294753 - 40294692
Alignment:
Q  313 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 374  Q
    |||||||||||||||||||||| |  || |||||| |||  |||||||||||||||| ||||    
T  40294753 gcgcaactgcggagactaatccttcgagtattgtgggattcaaatgagcggcaagctttccc 40294692  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 55123238 - 55123177
Alignment:
Q  313 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 374  Q
    ||||||||||| ||||||||||||  |||||||||||| | ||||| |  ||||||||||||    
T  55123238 gcgcaactgcgaagactaatccctcgagcattgtgagacccaaatgggtagcaagctctccc 55123177  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 42297442 - 42297479
Alignment:
Q  313 gcgcaactgcggagactaatccctaaagcattgtgaga 350  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  42297442 gcgcaactgcggagactaatccctcgagcattgtgaga 42297479  T

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