View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15454_high_25 (Length: 327)
Name: NF15454_high_25
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15454_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 39811438 - 39811738
Alignment:
| Q |
17 |
tcatacatctcttaaaggaaggatatataagaatgtgatcatatatgcctcaaggttttgagtgtagatcaatatttcttaggggtcatcctggtcatta |
116 |
Q |
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| T |
39811438 |
tcatacatctcttaaaggaaggatatataagaatgtgattatatatgcctcaaggttttgagtgtagatcaatatttcttaggggtcatcctggtcatta |
39811537 |
T |
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| Q |
117 |
gctcgttgtagccgataaccaaagaattactatgtcacgcaataaccaaatatattnnnnnnnctgaaatactaatagtacaaagtttggaggcattact |
216 |
Q |
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| T |
39811538 |
gctcgttgtagccgataaccaaagaattactatgtcacgcaataaccaaatatattaaaaaaactgaaatactaatagtacaaagtttggaggcattact |
39811637 |
T |
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| Q |
217 |
tatatttgctcttattacaccttagttagtactgttattaacttgaaactaataacattatgcaggtgatgcgtttcttcacaaatcctcacaagcctat |
316 |
Q |
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| T |
39811638 |
tatatttgctcttattacaccttagttagtactgttattaacttgaaactaataacattatgcaggtgatgcgtttcttcacaaatcctcacaagcctat |
39811737 |
T |
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| Q |
317 |
g |
317 |
Q |
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| T |
39811738 |
g |
39811738 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 15799110 - 15799146
Alignment:
| Q |
274 |
ttatgcaggtgatgcgtttcttcacaaatcctcacaa |
310 |
Q |
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| T |
15799110 |
ttatgcaggtgatgcgtttctttacaaatcctcacaa |
15799146 |
T |
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