View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15454_high_26 (Length: 316)
Name: NF15454_high_26
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15454_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 123 - 297
Target Start/End: Complemental strand, 41389407 - 41389233
Alignment:
| Q |
123 |
catatttgtgcatcaaatatcaaatttagaaaacctgtttaacgtacaagaggatgaatttcatatataatccaatacatggacatgtattaggacaaaa |
222 |
Q |
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| T |
41389407 |
catatttgtgcatcaaatatcaaatttagaaaacctgtttaacgtacaagaggatgaatttcatatataatccaatacatggacatgtatttggacaaaa |
41389308 |
T |
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| Q |
223 |
aatggagggcctgatttaacttacttgaaaagtatatactgtggttattcttcttttttggtataaaactatagc |
297 |
Q |
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| T |
41389307 |
aatggagggcctgatttaacttgcttgaaaagtatatactgtggttattcttcttttttggtataaaactatagc |
41389233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 41389523 - 41389467
Alignment:
| Q |
7 |
ggacatcatcatgatgaaagttttatagtactactacattatacatagtccattttt |
63 |
Q |
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| T |
41389523 |
ggacctcatcatgatgaaagttttatagtactactacattatacatagtccattttt |
41389467 |
T |
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