View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15454_high_29 (Length: 261)

Name: NF15454_high_29
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15454_high_29
NF15454_high_29
[»] chr3 (19 HSPs)
chr3 (1-256)||(19951039-19951294)
chr3 (1-256)||(19848902-19849163)
chr3 (1-256)||(20036548-20036809)
chr3 (1-173)||(19956082-19956257)
chr3 (2-176)||(20046118-20046292)
chr3 (1-176)||(26646999-26647174)
chr3 (1-168)||(26653155-26653322)
chr3 (2-256)||(19818472-19818726)
chr3 (2-171)||(19858072-19858244)
chr3 (1-173)||(19838391-19838566)
chr3 (5-164)||(19812287-19812446)
chr3 (5-171)||(20016150-20016319)
chr3 (2-171)||(19943720-19943888)
chr3 (2-161)||(19853522-19853684)
chr3 (32-250)||(30914564-30914785)
chr3 (2-171)||(24839920-24840092)
chr3 (94-173)||(19989520-19989599)
chr3 (2-53)||(19989643-19989694)
chr3 (2-57)||(19971728-19971783)
[»] chr5 (2 HSPs)
chr5 (1-204)||(26354872-26355078)
chr5 (1-172)||(9815036-9815207)
[»] chr1 (1 HSPs)
chr1 (1-178)||(1717207-1717384)
[»] chr8 (6 HSPs)
chr8 (91-187)||(22652126-22652222)
chr8 (15-151)||(22685642-22685778)
chr8 (2-171)||(22689601-22689773)
chr8 (2-57)||(22651839-22651894)
chr8 (189-256)||(22685799-22685866)
chr8 (11-57)||(11564089-11564135)
[»] chr4 (2 HSPs)
chr4 (1-174)||(6398258-6398431)
chr4 (2-176)||(6397685-6397861)
[»] chr7 (8 HSPs)
chr7 (2-139)||(12497241-12497378)
chr7 (2-139)||(12521106-12521243)
chr7 (27-139)||(12581424-12581536)
chr7 (78-139)||(12519817-12519878)
chr7 (78-139)||(12580106-12580167)
chr7 (133-176)||(12496280-12496323)
chr7 (133-176)||(12520145-12520188)
chr7 (133-176)||(12580434-12580477)


Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 19951294 - 19951039
Alignment:
Q  1 taaaacagctggtgccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctcaccaatttattattaggaaaaacaaaa 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19951294 taaaacagctggagccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctcaccaatttattattaggaaaaacaaaa 19951195  T
Q  101 agtgacaaccaagtaacaaggaaggcttaatgttcaatttcactacctttatcaatgaaaatatccatccataatgttcctctagccatacctgttttag 200  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  19951194 agtgacaaccaagtaacaaggaaggcttcatgttcaatttcactacctttatcagtgaaaatatccatccataatgttgctctagccatacctgttttag 19951095  T
Q  201 tcttagaaagtgtctgtcttgcaatgatgagcttttcttcaacctctttcatttct 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19951094 tcttagaaagtgtctgtcttgcaatgatgagcttttcttcaacctctttcatttct 19951039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 19849163 - 19848902
Alignment:
Q  1 taaaacagctggtgccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctcaccaatt---tattattaggaaaaaca 97  Q
    ||||||||| ||||| ||||||||| ||||||||||||||||||  | ||||||||| | | || ||||  ||||||| |   | |||| ||||||||||    
T  19849163 taaaacagcaggtgctaaagcaatacgatttcctctagcaagatatacagcaataggaaacaaagaacttttcaccaaatagtttttatgaggaaaaaca 19849064  T
Q  98 aaaagtgacaaccaagtaacaaggaaggcttaatgttcaatttcactacctttatcaatgaaaatatccatccataatgttcctctagccatacct---g 194  Q
    |||||||||||||||||| |||| || |||| ||||||||||||||||||||||||||||||||||||||||||  ||| |   ||||||| ||||        
T  19849063 aaaagtgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcaatgaaaatatccatccagtatgatgtgctagccacacctccat 19848964  T
Q  195 ttttagtcttagaaagtgtctgtcttgcaatgatgagcttttcttcaacctctttcatttct 256  Q
     ||| |  |||| ||||   |||||||||||||||||||||||||||| |||||||||||||    
T  19848963 gtttcgcattagtaagttgttgtcttgcaatgatgagcttttcttcaatctctttcatttct 19848902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 20036548 - 20036809
Alignment:
Q  1 taaaacagctggtgccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctcaccaatt---tattattaggaaaaaca 97  Q
    ||||||||| ||||| ||||||||| ||||||||||||||||||  | ||||||||| | | || ||||  ||||||| |   | |||| ||||||||||    
T  20036548 taaaacagcaggtgctaaagcaatacgatttcctctagcaagatatacagcaataggaaacaaagaacttttcaccaaatagtttttatgaggaaaaaca 20036647  T
Q  98 aaaagtgacaaccaagtaacaaggaaggcttaatgttcaatttcactacctttatcaatgaaaatatccatccataatgttcctctagccatacct---g 194  Q
    |||||||||||||||||| |||| || |||| ||||||||||||||||||||||||||||||||||||||||||  ||| |   ||||||| ||||        
T  20036648 aaaagtgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcaatgaaaatatccatccagtatgatgtgctagccacacctccat 20036747  T
Q  195 ttttagtcttagaaagtgtctgtcttgcaatgatgagcttttcttcaacctctttcatttct 256  Q
     ||| |  |||| ||||   |||||||||||||||||||||||||||| |||||||||||||    
T  20036748 gtttcgcattagtaagttgttgtcttgcaatgatgagcttttcttcaatctctttcatttct 20036809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 19956257 - 19956082
Alignment:
Q  1 taaaacagctggtgccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctcacc----aatttattattaggaaaaac 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | | |||||||  ||||     ||| | |||| ||| |||||    
T  19956257 taaaacagctggtgccaaagcaataggatttcctctagcaagatgaacaacaataggaaacaaataacttttcacggaagaatat-ttatgagggaaaac 19956159  T
Q  97 aaaaagtgacaaccaagtaacaaggaaggcttaatgttcaatttcactacctttatcaatgaaaatatccatccata 173  Q
    ||||| ||||||||||||| |||| || |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19956158 aaaaattgacaaccaagtagcaagaaaagcttcatgttcaatttcactacctttatcaatgaaaatatccatccata 19956082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 2 - 176
Target Start/End: Complemental strand, 20046292 - 20046118
Alignment:
Q  2 aaaacagctggtgccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctcaccaatttattattaggaaaaacaaaaa 101  Q
    |||||||| |||||||||||||| ||||||||||||||||||| |||||||||||  | | || || |  ||||||  || |||| ||||||||||||||    
T  20046292 aaaacagcaggtgccaaagcaattggatttcctctagcaagattaatagcaatagaaaacaaacaatttttcaccatatttttatgaggaaaaacaaaaa 20046193  T
Q  102 gtgacaaccaagtaacaaggaaggcttaatgttcaatttcactacctttatcaatgaaaatatccatccataatg 176  Q
     |||||||||||||  |||||||||||  ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  20046192 ttgacaaccaagtagtaaggaaggcttcgtgttcaatttcactacctttatcgatgaacatatccatccataatg 20046118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 26647174 - 26646999
Alignment:
Q  1 taaaacagctggtgccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctcaccaatttattattaggaaaaacaaaa 100  Q
    ||||||||| |||||||||||||| ||||| |||||||||||||||| ||||||||| | | || ||||  ||||||| ||   || |||||||||| ||    
T  26647174 taaaacagccggtgccaaagcaattggattccctctagcaagatgaacagcaataggaaacaaacaacttttcaccaaatttagatgaggaaaaacataa 26647075  T
Q  101 agtgacaaccaagtaacaaggaaggcttaatgttcaatttcactacctttatcaatgaaaatatccatccataatg 176  Q
    | |||||||||||||  |||||| |||| |||||||||||||||||||||||| |||||| |||| ||||||||||    
T  26647074 actgacaaccaagtagaaaggaatgcttcatgttcaatttcactacctttatccatgaaactatcgatccataatg 26646999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 26653322 - 26653155
Alignment:
Q  1 taaaacagctggtgccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctcaccaatttattattaggaaaaacaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  | | || ||||  |||| ||||   ||| |||||||||||||    
T  26653322 taaaacagctggtgccaaagcaataggatttcctctagcaagatgaacagcaatagaaaacaaagaacttttcactaattctatatgaggaaaaacaaaa 26653223  T
Q  101 agtgacaaccaagtaacaaggaaggcttaatgttcaatttcactacctttatcaatgaaaatatccat 168  Q
    | |||||||||||   ||||||| || | ||||||||||||||||||||  |||||||||||||||||    
T  26653222 attgacaaccaagctgcaaggaatgcatcatgttcaatttcactaccttagtcaatgaaaatatccat 26653155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 256
Target Start/End: Complemental strand, 19818726 - 19818472
Alignment:
Q  2 aaaacagctggtgccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctcaccaatttattattaggaaaaacaaaaa 101  Q
    |||||||| |||||||||||||||||||| ||||||||||||| || ||||| ||| | |  |||| |  ||||||| || |||| ||||||||||||||    
T  19818726 aaaacagccggtgccaaagcaataggattccctctagcaagattaacagcaacaggaaacagataatttttcaccaaattcttatgaggaaaaacaaaaa 19818627  T
Q  102 gtgacaaccaagtaacaaggaaggcttaatgttcaatttcactacctttatcaatgaaaatatccatccataatgttcctctagccatacctgttttagt 201  Q
     ||| ||||||||| |||| || |||| ||||||||||||  |||||||| |||| ||||| |||||||||  || |    ||||| || ||   |||||    
T  19818626 ttgataaccaagtagcaagaaaagcttcatgttcaatttcggtacctttaccaataaaaatttccatccattttgatgtggtagccttagcttgattagt 19818527  T
Q  202 cttagaaagtgtctgtcttgcaatgatgagcttttcttcaacctctttcatttct 256  Q
    ||   || || |||||||||||||||||||||| | |||||||||| ||||||||    
T  19818526 ctgccaaggtttctgtcttgcaatgatgagcttcttttcaacctctctcatttct 19818472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 171
Target Start/End: Complemental strand, 19858244 - 19858072
Alignment:
Q  2 aaaacagctggtgccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctcacc--aatttat-tattaggaaaaacaa 98  Q
    |||||||| ||||||||||| |||| ||||||||||||||||  |||||||||||| | | || | ||  ||||   ||  ||| |||||||||||||||    
T  19858244 aaaacagcaggtgccaaagcgatagtatttcctctagcaagaccaatagcaataggaaacaaagatcttttcacattaaagtatctattaggaaaaacaa 19858145  T
Q  99 aaagtgacaaccaagtaacaaggaaggcttaatgttcaatttcactacctttatcaatgaaaatatccatcca 171  Q
    ||| ||||||||||||| |||| || |||| ||| |||||||||||||||||||| |||||||||||||||||    
T  19858144 aaattgacaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 19858072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 19838566 - 19838391
Alignment:
Q  1 taaaacagctggtgccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctcac-caat--ttattattaggaaaaaca 97  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| | |||| || | | || | ||  |||| |||   |  | |||||||||||||    
T  19838566 taaaacagctggtgccaaagcaatagaatttcctctagcaagatgaacaacaattggaaacaaaaagcttttcacgcaagagtgttgattaggaaaaaca 19838467  T
Q  98 aaaagtgacaaccaagtaacaaggaaggcttaatgttcaatttcactacctttatcaatgaaaatatccatccata 173  Q
    |||| ||||||||||||| | || || |||| |||||||||||| ||||||||||| |||||||||||||||||||    
T  19838466 aaaattgacaaccaagtagctagaaaagcttcatgttcaatttcgctacctttatcgatgaaaatatccatccata 19838391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 5 - 164
Target Start/End: Complemental strand, 19812446 - 19812287
Alignment:
Q  5 acagctggtgccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctcaccaatttattattaggaaaaacaaaaagtg 104  Q
    |||||||||||||||||||||||||  |||||||||||| ||||||| || || | | || |  |  ||||||| |  |||| |||||||||||||| ||    
T  19812446 acagctggtgccaaagcaataggataccctctagcaagaagaatagcgatcggaaacaaagactttttcaccaaatatttatgaggaaaaacaaaaattg 19812347  T
Q  105 acaaccaagtaacaaggaaggcttaatgttcaatttcactacctttatcaatgaaaatat 164  Q
    ||||||||||| |||| || |||| |||||||||||||||||||||| ||| ||||||||    
T  19812346 acaaccaagtagcaagaaatgcttcatgttcaatttcactacctttaccaacgaaaatat 19812287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 171
Target Start/End: Original strand, 20016150 - 20016319
Alignment:
Q  5 acagctggtgccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctcac---caatttattattaggaaaaacaaaaa 101  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| || | | || ||||  ||||     | |  |||| ||| ||||||||||    
T  20016150 acagctggtgccaaagcaataggatttcgtctagcaagatgaatagcaatcggaaacaaacaacttttcacggaagagtatttatgagggaaaacaaaaa 20016249  T
Q  102 gtgacaaccaagtaacaaggaaggcttaatgttcaatttcactacctttatcaatgaaaatatccatcca 171  Q
     ||||| ||||||| |||| || |||| |||||||||||||||||||||||||  ||| |||||||||||    
T  20016250 ttgacagccaagtagcaagaaatgcttcatgttcaatttcactacctttatcagcgaacatatccatcca 20016319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 171
Target Start/End: Complemental strand, 19943888 - 19943720
Alignment:
Q  2 aaaacagctggtgccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctcacca-att-tat-tattaggaaaaacaa 98  Q
    |||||||| ||||||||||| |||||| | |||||||||||||||| ||||||||| | |  | ||||  |||||| ||| ||| ||| |||||||||||    
T  19943888 aaaacagcaggtgccaaagccataggaatccctctagcaagatgaacagcaataggaaac--agaacttttcaccacattgtatctatgaggaaaaacaa 19943791  T
Q  99 aaagtgacaaccaagtaacaaggaaggcttaatgttcaatttcactacctttatcaatgaaaatatccatcca 171  Q
    |   ||||||||||||| |||| || |||| |||||||||||||||||||||||| |||||||||||||||||    
T  19943790 at--tgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcgatgaaaatatccatcca 19943720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 161
Target Start/End: Complemental strand, 19853684 - 19853522
Alignment:
Q  2 aaaacagctggtgccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctcacca--atttat-tattaggaaaaacaa 98  Q
    |||||||| |||||||||||||||| ||| |||||||||||| ||||||||||||| | | || | ||  |||| |  |  ||| ||| |||||||||||    
T  19853684 aaaacagcaggtgccaaagcaatagtattacctctagcaagacgaatagcaataggaaacaaagatcttttcacaataaagtatctatgaggaaaaacaa 19853585  T
Q  99 aaagtgacaaccaagtaacaaggaaggcttaatgttcaatttcactacctttatcaatgaaaa 161  Q
    |||  |||||||||||| |||| || |||| |||||||||||||||||||||| ||| |||||    
T  19853584 aaatagacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttaccaaagaaaa 19853522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 32 - 250
Target Start/End: Complemental strand, 30914785 - 30914564
Alignment:
Q  32 cctctagcaagatgaatag---caataggtagcgaataactcctcaccaatttattattaggaaaaacaaaaagtgacaaccaagtaacaaggaaggctt 128  Q
    |||||||||||||||||||   ||||||| | | || ||||  ||||||| |  || | ||| |||||||||| |||||||||||||  |||||| ||||    
T  30914785 cctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgctt 30914686  T
Q  129 aatgttcaatttcactacctttatcaatgaaaatatccatccataatgttcctctagccatacctgttttagtcttagaaagtgtctgtcttgcaatgat 228  Q
     |||||||||||||||| |||||||||||||||||  ||||  || || |  |||| || |||||  |||| ||||| |||||   |||||||| |||||    
T  30914685 catgttcaatttcactaactttatcaatgaaaatactcatctctattgatgttctaaccttaccttgtttactcttataaagttcttgtcttgcgatgat 30914586  T
Q  229 gagcttttcttcaacctctttc 250  Q
    |||| | ||||||| |||||||    
T  30914585 gagcatctcttcaatctctttc 30914564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 171
Target Start/End: Original strand, 24839920 - 24840092
Alignment:
Q  2 aaaacagctggtgccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctcacca---atttattattaggaaaaacaa 98  Q
    |||||||| |||||||||| ||||||||| |||||||| ||||||| ||||| ||| | | || |||   |||| |   | |  |||| ||| |||||||    
T  24839920 aaaacagcaggtgccaaagaaataggattccctctagctagatgaacagcaacaggaaacaaagaacatttcactagagagtatttatgagggaaaacaa 24840019  T
Q  99 aaagtgacaaccaagtaacaaggaaggcttaatgttcaatttcactacctttatcaatgaaaatatccatcca 171  Q
    ||| ||||||||||||| |||| || |||| ||| |||| ||||||||||||||| |||||||||||||||||    
T  24840020 aaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaatatccatcca 24840092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 19989599 - 19989520
Alignment:
Q  94 aacaaaaagtgacaaccaagtaacaaggaaggcttaatgttcaatttcactacctttatcaatgaaaatatccatccata 173  Q
    |||||||| ||||||||||||| |||| || |||| |||||||| |||| |||||||||||||||||| |||||||||||    
T  19989599 aacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatccata 19989520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 19989694 - 19989643
Alignment:
Q  2 aaaacagctggtgccaaagcaataggatttcctctagcaagatgaatagcaa 53  Q
    ||||| || ||||| || ||||||||||||||||||||||||||||||||||    
T  19989694 aaaactgcaggtgctaatgcaataggatttcctctagcaagatgaatagcaa 19989643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 19971783 - 19971728
Alignment:
Q  2 aaaacagctggtgccaaagcaataggatttcctctagcaagatgaatagcaatagg 57  Q
    ||||||| ||||||||||||||||| ||| |||||| | | |||||||||||||||    
T  19971783 aaaacagttggtgccaaagcaatagtattgcctctaaccaaatgaatagcaatagg 19971728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 26354872 - 26355078
Alignment:
Q  1 taaaacagctggtgccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctcaccaattt--attat-taggaaaaaca 97  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| | | || ||||  |||||||  |  ||| | |||||||||||    
T  26354872 taaaacagccggtgccaaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaaca 26354971  T
Q  98 aaaagtgacaaccaagtaacaaggaaggcttaatgttcaatttcactacctttatcaatgaaaatatccatccataatgttcctctagccatacctgttt 197  Q
    |||| ||| ||||||| ||||| ||| |||| |||||||| ||||||||||||||| ||||||| |||||||||||||| |  ||| | | |||||||||    
T  26354972 aaaattgataaccaagcaacaatgaatgcttcatgttcaacttcactacctttatccatgaaaacatccatccataatgatattcttggcttacctgttt 26355071  T
Q  198 tagtctt 204  Q
    |||||||    
T  26355072 tagtctt 26355078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 9815207 - 9815036
Alignment:
Q  1 taaaacagctggtgccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctcaccaatttattattaggaaaaacaaaa 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||  | | || ||||  |||||||    |||| ||  ||||||||     
T  9815207 taaaacagctggtgccaaagcaatagaatttcctctagcaagatgaatagcaatagaaaacaaagaacttttcaccaaagatttatgagttaaaacaaag 9815108  T
Q  101 agtgacaaccaagtaacaaggaaggcttaatgttcaatttcactacctttatcaatgaaaatatccatccat 172  Q
    | ||||||||| ||| ||| ||| |||| ||| ||||||||||||||||| || ||||||| ||||||||||    
T  9815107 attgacaaccacgtagcaatgaacgcttcatgctcaatttcactacctttgtcgatgaaaaaatccatccat 9815036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 1717384 - 1717207
Alignment:
Q  1 taaaacagctggtgccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctcaccaatttattattaggaaaaacaaaa 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| | | || |  |  |||||||    |||| |||||||||| ||    
T  1717384 taaaacagccggtgccaaagcaataggatttcctctagcaagatgaacagcaataggaaacaaagattttttcaccaaagctttatgaggaaaaacataa 1717285  T
Q  101 agtgacaaccaagtaacaaggaaggcttaatgttcaatttcactacctttatcaatgaaaatatccatccataatgtt 178  Q
    |  |||||||||||| |||| || |||| ||||||||||||||||||||||||||  |||| ||||||||||||||||    
T  1717284 accgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcaacaaaaacatccatccataatgtt 1717207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 91 - 187
Target Start/End: Original strand, 22652126 - 22652222
Alignment:
Q  91 aaaaacaaaaagtgacaaccaagtaacaaggaaggcttaatgttcaatttcactacctttatcaatgaaaatatccatccataatgttcctctagcc 187  Q
    ||||||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  22652126 aaaaacaaaaattgacaaccaagtagcaaggaacgcttcatgttcaatttcactacctttatcgatgaaaatatccatccataatgttgctctagcc 22652222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 22685642 - 22685778
Alignment:
Q  15 ccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctcaccaatttattattaggaaaaacaaaaagtgacaaccaagt 114  Q
    |||||||||||||||| ||||||||||||||||||||||| || | |  | || |  |||||||  | |||| ||||||||||||||||||||||||||     
T  22685642 ccaaagcaataggattccctctagcaagatgaatagcaatcggaaacatagaagttttcaccaaaattttatgaggaaaaacaaaaagtgacaaccaagc 22685741  T
Q  115 aacaaggaaggcttaatgttcaatttcactaccttta 151  Q
    | |||| || |||| ||| ||||||||||||||||||    
T  22685742 agcaagaaatgcttcatgctcaatttcactaccttta 22685778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 171
Target Start/End: Original strand, 22689601 - 22689773
Alignment:
Q  2 aaaacagctggtgccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctcaccaatttattatta---ggaaaaacaa 98  Q
    |||||||| |||||||||||||||| ||| |||||||| |||||||||| |||||  | | || ||||  | ||| |  |||| |||   ||||||||||    
T  22689601 aaaacagcaggtgccaaagcaatagtattgcctctagccagatgaatagaaatagtaaacaaagaacttttgaccgacatatttttatgaggaaaaacaa 22689700  T
Q  99 aaagtgacaaccaagtaacaaggaaggcttaatgttcaatttcactacctttatcaatgaaaatatccatcca 171  Q
    ||| ||||||||||||| |||| || |||| |||||||| |||| |||| ||||| ||||||| |||||||||    
T  22689701 aaattgacaaccaagtagcaagaaatgcttcatgttcaaattcattaccattatcgatgaaaacatccatcca 22689773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 22651839 - 22651894
Alignment:
Q  2 aaaacagctggtgccaaagcaataggatttcctctagcaagatgaatagcaatagg 57  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  22651839 aaaacagctggtgcaaaagcaataggatttcctctagcaagatgaacagcaatagg 22651894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 22685799 - 22685866
Alignment:
Q  189 tacctgttttagtcttagaaagtgtctgtcttgcaatgatgagcttttcttcaacctctttcatttct 256  Q
    |||||| ||| |||||| |||||||||||||||| ||||||||||||| ||||| |||||||||||||    
T  22685799 tacctgatttggtcttataaagtgtctgtcttgctatgatgagcttttgttcaatctctttcatttct 22685866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 11564089 - 11564135
Alignment:
Q  11 ggtgccaaagcaataggatttcctctagcaagatgaatagcaatagg 57  Q
    ||||| ||||||||||| ||||||||||||||||||| |||||||||    
T  11564089 ggtgctaaagcaataggttttcctctagcaagatgaacagcaatagg 11564135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 6398431 - 6398258
Alignment:
Q  1 taaaacagctggtgccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctcaccaatttattattaggaaaaacaaaa 100  Q
    ||||||||||||||||||| | || |||||||||||||| |||| || ||||||||  | | || ||||  |||||| | | ||| ||||||||||||||    
T  6398431 taaaacagctggtgccaaaccgattggatttcctctagcgagattaacagcaatagaaaacaaacaacttttcaccattgttttactaggaaaaacaaaa 6398332  T
Q  101 agtgacaaccaagtaacaaggaaggcttaatgttcaatttcactacctttatcaatgaaaatatccatccataa 174  Q
    | | |||||||| || |||||||||||| |||||||||||||||||||||||  || || ||||||||||||||    
T  6398331 attaacaaccaattagcaaggaaggcttcatgttcaatttcactacctttatagataaacatatccatccataa 6398258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 176
Target Start/End: Original strand, 6397685 - 6397861
Alignment:
Q  2 aaaacagctggtgccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataa--ctcctcaccaatttattattaggaaaaacaaa 99  Q
    ||||||| ||||||||||||||| |||||| |||||||||||| || |  |||||  ||| || ||  ||  |||||| ||| |||  ||||||| || |    
T  6397685 aaaacagatggtgccaaagcaattggattttctctagcaagattaacattaatagaaagcaaacaaaacttttcaccatttttttaggaggaaaagcaca 6397784  T
Q  100 aagtgacaaccaagtaacaaggaaggcttaatgttcaatttcactacctttatcaatgaaaatatccatccataatg 176  Q
    || ||||||||| ||| |||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||    
T  6397785 aattgacaaccaggtagcaaggaaggcttcatgttcaatttcactacctttatcgatgaacatatccatccataatg 6397861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 12497378 - 12497241
Alignment:
Q  2 aaaacagctggtgccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctcaccaatttattattaggaaaaacaaaaa 101  Q
    ||||||||||| | ||||| |||  |||||| ||||||||||| |||||||||||  | | |||||||  |||||| |||  ||| ||||||||||||||    
T  12497378 aaaacagctggcggcaaagtaatttgatttcttctagcaagattaatagcaatagaaaacaaataacttatcaccatttttctatgaggaaaaacaaaaa 12497279  T
Q  102 gtgacaaccaagtaacaaggaaggcttaatgttcaatt 139  Q
     ||||||||| ||| |||||||||||| ||||||||||    
T  12497278 ttgacaaccaggtagcaaggaaggcttcatgttcaatt 12497241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 12521243 - 12521106
Alignment:
Q  2 aaaacagctggtgccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctcaccaatttattattaggaaaaacaaaaa 101  Q
    ||||||||||| | ||||| |||  |||||| ||||||||||| |||||||||||  | | |||||||  |||||| |||  ||| ||||||||||||||    
T  12521243 aaaacagctggcggcaaagtaatttgatttcttctagcaagattaatagcaatagaaaacaaataacttatcaccatttttctatgaggaaaaacaaaaa 12521144  T
Q  102 gtgacaaccaagtaacaaggaaggcttaatgttcaatt 139  Q
     ||||||||| ||| |||||||||||| ||||||||||    
T  12521143 ttgacaaccaggtagcaaggaaggcttcatgttcaatt 12521106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 12581536 - 12581424
Alignment:
Q  27 gatttcctctagcaagatgaatagcaataggtagcgaataactcctcaccaatttattattaggaaaaacaaaaagtgacaaccaagtaacaaggaaggc 126  Q
    |||||| ||||||||||| |||||||||||  | | |||||||  |||||| |||  ||  |||||||||||||| ||||||||||||| ||||||||||    
T  12581536 gatttcttctagcaagattaatagcaatagaaaacaaataacttttcaccatttttctacgaggaaaaacaaaaattgacaaccaagtagcaaggaaggc 12581437  T
Q  127 ttaatgttcaatt 139  Q
    || ||||||||||    
T  12581436 ttcatgttcaatt 12581424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 12519817 - 12519878
Alignment:
Q  78 atttattattaggaaaaacaaaaagtgacaaccaagtaacaaggaaggcttaatgttcaatt 139  Q
    |||| |||| |||||||||||||| |||||||||||| | ||||||||||| ||||||||||    
T  12519817 attttttatgaggaaaaacaaaaattgacaaccaagttaaaaggaaggcttcatgttcaatt 12519878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 12580106 - 12580167
Alignment:
Q  78 atttattattaggaaaaacaaaaagtgacaaccaagtaacaaggaaggcttaatgttcaatt 139  Q
    |||| |||| |||||||||||||| |||||||||||||| ||||||||| | ||||||||||    
T  12580106 attttttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcctcatgttcaatt 12580167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 12496323 - 12496280
Alignment:
Q  133 ttcaatttcactacctttatcaatgaaaatatccatccataatg 176  Q
    |||||||||||||| |||||| ||||| ||||||||||||||||    
T  12496323 ttcaatttcactacatttatcgatgaacatatccatccataatg 12496280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 12520188 - 12520145
Alignment:
Q  133 ttcaatttcactacctttatcaatgaaaatatccatccataatg 176  Q
    |||||||||||||| |||||| ||||| ||||||||||||||||    
T  12520188 ttcaatttcactacatttatcgatgaacatatccatccataatg 12520145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 12580477 - 12580434
Alignment:
Q  133 ttcaatttcactacctttatcaatgaaaatatccatccataatg 176  Q
    |||||||||||||| |||||| ||||| ||||||||||||||||    
T  12580477 ttcaatttcactacatttatcgatgaacatatccatccataatg 12580434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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