View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15454_high_35 (Length: 223)
Name: NF15454_high_35
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15454_high_35 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 44460636 - 44460843
Alignment:
| Q |
1 |
gtacatttggctttcaagatgttgaatgatatccctgaggaggtggacgaccgggaaaaattgtttaaattcatgctctttacacatgttttcggagcct |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44460636 |
gtacatttggctttcaagatgttgaatgatatccccgaggaggtggacgaccgggaaaaattgtttaaactcatgctctttacacatgttttcggagcct |
44460735 |
T |
|
| Q |
101 |
tgtgtgggtttaaagatttcgaaacagccaagcagttgatctttaaaatgattgcagacagtatacatccttcaatatatgatatcagtataattattac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44460736 |
tgtgtgggtttaaagatttcgaaacagccaagcagttgatccttaaaatgattgcagacagtctacatccttcaatatatgatatcagtataattattac |
44460835 |
T |
|
| Q |
201 |
tgcctatg |
208 |
Q |
| |
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|||||||| |
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|
| T |
44460836 |
tgcctatg |
44460843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 44468169 - 44468376
Alignment:
| Q |
1 |
gtacatttggctttcaagatgttgaatgatatccctgaggaggtggacgaccgggaaaaattgtttaaattcatgctctttacacatgttttcggagcct |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44468169 |
gtacatttggctttcaagatgttgaatgatatccccgaggaggtggacgaccgggaaaaattgtttaaactcatgctctttacacatgttttcggagcct |
44468268 |
T |
|
| Q |
101 |
tgtgtgggtttaaagatttcgaaacagccaagcagttgatctttaaaatgattgcagacagtatacatccttcaatatatgatatcagtataattattac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44468269 |
tgtgtgggtttaaagatttcgaaacagccaagcagttgatccttaaaatgattgcagacagtctacatccttcaatatatgatatcagtataattattac |
44468368 |
T |
|
| Q |
201 |
tgcctatg |
208 |
Q |
| |
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|||||||| |
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|
| T |
44468369 |
tgcctatg |
44468376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 34502045 - 34501841
Alignment:
| Q |
1 |
gtacatttggctttcaagatgttgaatgatatccctgaggaggtggacgaccgggaaaaattgtttaaattcatgctctttacacatgttttcggagcct |
100 |
Q |
| |
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|||||| ||||||| |||||||||||||||||||||||| |||||| | ||||| ||| | ||||| | |||||||| |||||| | |||||| |
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| T |
34502045 |
gtacatctggctttggagatgttgaatgatatccctgagg---tggacgcctgggaagaatggcttaaacaaacgctctttatgcatgttgccagagcct |
34501949 |
T |
|
| Q |
101 |
tgtgtgggtttaaagatttcgaaacagccaagcagttgatctttaaaatgattgcagacagtatacatccttcaatatatgatatcagtataattattac |
200 |
Q |
| |
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|||||||||||||| |||| ||| |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34501948 |
tgtgtgggtttaaaaatttagaagcagccaagaagttgatccttaaaatgattgcagacagtctacatccttcaatatatgatatcagtataattattac |
34501849 |
T |
|
| Q |
201 |
tgcctatg |
208 |
Q |
| |
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|||||||| |
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|
| T |
34501848 |
tgcctatg |
34501841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 46359506 - 46359606
Alignment:
| Q |
1 |
gtacatttggctttcaagatgttgaatgatatccctgaggaggtggacgaccgggaaaaattgtttaaattcatgctctttacacatgttttcggagcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
46359506 |
gtacatttggctttcaagatgttgaatgatatccccgaggaggtggacgaccgggaaaaattgtttaaactcatgctctttacacatgttttcggagcct |
46359605 |
T |
|
| Q |
101 |
t |
101 |
Q |
| |
|
| |
|
|
| T |
46359606 |
t |
46359606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 46359603 - 46359642
Alignment:
| Q |
169 |
ccttcaatatatgatatcagtataattattactgcctatg |
208 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
46359603 |
ccttcaatatacgatatcagtataattattactgcctatg |
46359642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 40180166 - 40180103
Alignment:
| Q |
96 |
agccttgtgtgggtttaaagatttcgaaacagccaagcagttgatctttaaaatgattgcagac |
159 |
Q |
| |
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|||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
40180166 |
agccttgtgtcagtttaaagattttgatgcagccaagcagttgatctttaaaatgattgcagac |
40180103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 38604673 - 38604618
Alignment:
| Q |
97 |
gccttgtgtgggtttaaagatttcgaaacagccaagcagttgatctttaaaatgat |
152 |
Q |
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||||||||| ||||| |||||||||| |||||||||| ||||||||||||||||| |
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| T |
38604673 |
gccttgtgtcggtttgaagatttcgatgcagccaagcaattgatctttaaaatgat |
38604618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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