View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15454_high_6 (Length: 711)
Name: NF15454_high_6
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15454_high_6 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 640; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 1 - 699
Target Start/End: Original strand, 36484418 - 36485118
Alignment:
| Q |
1 |
cctctctcttggacagtcgaagaatcttctcttgaaaagattctccgcaaccatggtcttccagctggtctcttccctcgaagtgtgaaatcattcaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36484418 |
cctctctcttggacagtcgaagaatcttctcttgaaaagattctccgcaaccatggtcttccagctggtctcttccctcgaagtgtgaaatcattcaaat |
36484517 |
T |
|
| Q |
101 |
ttgatcatcaaatgggtcatttagaggtacatttagaccgtccttgcctggctcaatatgaaaccacagtgttctttgacactattgtgaaagctaacct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36484518 |
ttgatcatcaaatgggtcatttagaggtacatttagaccgtccttgcctagctcaatatgaaaccagagtgttctttgacactattgtgaaagctaacct |
36484617 |
T |
|
| Q |
201 |
cagtttcagacaacttcaagttttcgagggtatgtctcgtgaagagcttttcttgtggttacctgttaaagatatctttgttgtggatccatcttctggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36484618 |
cagtttcagacaacttcaagttttcgagggtatgtctcgtgaagagcttttcttgtggttacctgttaaagatatctttgttgtggatccatcttctggt |
36484717 |
T |
|
| Q |
301 |
gtaattctcattgatattggttttgctttgaagtttctcgccttctctcgttttgatgagccaccaatttgtagatctcatcttggtaccgtcttttctc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36484718 |
gtaattctcattgatattggttttgctttgaagtttctcgccttctctcgttttgatgagccaccaatttgtagatctcatcttggtaccgtcttttctc |
36484817 |
T |
|
| Q |
401 |
tctcttttctaacccctcagttatgggttttaaatttatttaagta--aataatnnnnnnnntaaacagggttttgttataacatagttctgatttttga |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
36484818 |
tctcttttctaacccctcagttatgggttttaaatttatttaagtaataataat--aaaaaataaacagggttttgttataacatagttctgatttttga |
36484915 |
T |
|
| Q |
499 |
aattgaatgtttgattacaggtctttcatttcgtatgggtggaagtaaaggcactgcattggaagatcaaagataataagattattcatgatctgtatga |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36484916 |
aattgaatgtttgattacaggtctttcatttcgtatgggtggaagtaaaggcactgcattggaagatcaaagataataagattattcatgatctgtatga |
36485015 |
T |
|
| Q |
599 |
aaggatggcttcaccctttttaaattttgggggttttgttgttcag--aaaaattacattcatgtacaaaaatttgcaactcatataaattataaagtat |
696 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36485016 |
aaggatggcttcaccctttttaaattttgggggttttgttgttcagaaaaaaattacattcatatacaaaaatttgcaactcatataaattataaagtat |
36485115 |
T |
|
| Q |
697 |
aat |
699 |
Q |
| |
|
||| |
|
|
| T |
36485116 |
aat |
36485118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 24052562 - 24052919
Alignment:
| Q |
19 |
gaagaatcttctcttgaaaagattctccgcaaccatggtcttccagctggtctcttccctcgaagtgtgaaatcattcaaatttgatcatcaaatgggtc |
118 |
Q |
| |
|
||||||||||| |||| | || |||||||||||||||| || ||||| ||||||||||||| |||||||||||| ||||| || | | |||||||||| |
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|
| T |
24052562 |
gaagaatcttcccttgtagaggttctccgcaaccatggcctcccagcaggtctcttccctcaaagtgtgaaatcgttcaagttgg---accaaatgggtc |
24052658 |
T |
|
| Q |
119 |
atttagaggtacatttagaccgtccttgcctggctcaatatgaaaccacagtgttctttgacactattgtgaaagctaacctcagtttcagacaacttca |
218 |
Q |
| |
|
|||||||||||||| |||| | |||||| ||||||| ||||||||||||||||||||| |||| |||||||||| ||||||||||| ||||||||| | |
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|
| T |
24052659 |
atttagaggtacatctagatcatccttgtttggctcagtatgaaaccacagtgttctttaacaccgttgtgaaagcaaacctcagttttagacaacttaa |
24052758 |
T |
|
| Q |
219 |
agttttcgagggtatgtctcgtgaagagcttttcttgtggttacctgttaaagatatctttgttgtggatccatcttctggtgtaattctcattgatatt |
318 |
Q |
| |
|
||||| || ||||||||||||||||||||||| |||||| |||||||||||||||| ||||| | ||||||||||| ||||||||||| ||||||||| |
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|
| T |
24052759 |
ggttttagatggtatgtctcgtgaagagctttttttgtggctacctgttaaagatatatttgtccttgatccatcttccggtgtaattctgattgatatt |
24052858 |
T |
|
| Q |
319 |
ggttttgctttgaagtttctcgccttctctcgttttgatgagccaccaatttgtagatctc |
379 |
Q |
| |
|
|| | ||| ||||| | ||||| ||||||| |||||||||||| ||| |||||||||||| |
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|
| T |
24052859 |
gggtatgcgttgaaatacctcgctttctctcattttgatgagcccccagtttgtagatctc |
24052919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 20 - 408
Target Start/End: Original strand, 36472825 - 36473210
Alignment:
| Q |
20 |
aagaatcttctcttgaaaagattctccgcaaccatggtcttccagctggtctcttccctcgaagtgtgaaatcattcaaatttgatcatcaaatgggtca |
119 |
Q |
| |
|
||||||||||||||| | ||||||| || | |||||| |||||| |||||||||| |||| |||||||||||||| ||||| ||||| |||||| | |
|
|
| T |
36472825 |
aagaatcttctcttggagagattcttcgaagccatggccttccaactggtctctttcctcagagtgtgaaatcatttaaattggatca---aatgggacg |
36472921 |
T |
|
| Q |
120 |
tttagaggtacatttagaccgtccttgcctggctcaatatgaaaccacagtgttctttgacactattgtgaaagctaacctcagtttcagacaacttcaa |
219 |
Q |
| |
|
|||||||||||| || || |||||||| ||||||||||||||||||| ||||||||||||||| |||| ||||| |||||||||||| |||||||| | |
|
|
| T |
36472922 |
tttagaggtacacttggatcgtccttgtttggctcaatatgaaaccactgtgttctttgacactgttgtaaaagccaacctcagtttcggacaacttaag |
36473021 |
T |
|
| Q |
220 |
gttttcgagggtatgtctcgtgaagagcttttcttgtggttacctgttaaagatatctttgttgtggatccatcttctggtgtaattctcattgatattg |
319 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| ||| |||||||| |||||||||||| |
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|
| T |
36473022 |
gttttggagggtatgtctcgtgaagagcttttcttgtggctacctgttaaagatatcattgttactgatccaaaatctagtgtaattgtcattgatattg |
36473121 |
T |
|
| Q |
320 |
gttttgctttgaagtttctcgccttctctcgttttgatgagccaccaatttgtagatctcatcttggtaccgtcttttctctctctttt |
408 |
Q |
| |
|
||| ||| || || |||| | |||||||||||||| || || | |||||||||||||||| ||||||| ||||||||||||||||| |
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|
| T |
36473122 |
gttatgccttcaaacgtctctctttctctcgttttgacgaacctcgcatttgtagatctcatcatggtaccttcttttctctctctttt |
36473210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 36492205 - 36492572
Alignment:
| Q |
19 |
gaagaatcttctcttgaaaagattctccgcaaccatggtcttccagctggtctcttccctcgaagtgtgaaatcattcaaatttgatcatcaaatgggtc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||| |||||| ||||| |||||||| || || |||||||| |
|
|
| T |
36492205 |
gaagaatcttctcttgaaaagattctccataatcatggccttccagccggtctcttccctcaaagtgtaaaatctttcaaattggacca---aatgggtc |
36492301 |
T |
|
| Q |
119 |
atttagaggtacatttagaccgtccttgcctggctcaatatgaaaccacagtgttctttgacactattgtgaaagctaacctcagtttcagacaacttca |
218 |
Q |
| |
|
||||||||||||| || || ||||| || ||||||| |||||||| ||| ||||||||||||| |||||||||| |||||||||| |||||||| | |
|
|
| T |
36492302 |
atttagaggtacacttcgatcgtccatgtttggctcagtatgaaacaacaatgttctttgacaccgttgtgaaagccaacctcagttatggacaacttaa |
36492401 |
T |
|
| Q |
219 |
agttttcgagggtatgtctcgtgaagagcttttcttgtggttacctgttaaagatatctttgttgtggatccatcttctggtgtaattctcattgatatt |
318 |
Q |
| |
|
|||| ||||| |||| | |||||||||||||||||||| |||||||||| |||||| | ||| | |||||| |||||||| ||||| ||||||||||| |
|
|
| T |
36492402 |
gattttggagggcatgtttagtgaagagcttttcttgtggctacctgttaaggatatcatggttattgatccaacttctggtttaattgtcattgatatt |
36492501 |
T |
|
| Q |
319 |
ggttttgctttgaagtttctcgccttctctcgttttgatgagccaccaatttgtagatctcatcttggtac |
389 |
Q |
| |
|
|| ||||| || ||||||||| | || |||||||||||||| || ||||||||||||||| |||||||||| |
|
|
| T |
36492502 |
ggatttgcctttaagtttctctctttatctcgttttgatgaacctccaatttgtagatcttatcttggtac |
36492572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 484 - 683
Target Start/End: Original strand, 36492667 - 36492860
Alignment:
| Q |
484 |
agttctgatttttgaaattgaatgtttgattacaggtctttcatttcgtatgggtggaagtaaaggcactgcattggaagatcaaagataataagattat |
583 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||| |||||||||| |||||| || |||| || ||| |||||||| ||| || | |||| |
|
|
| T |
36492667 |
agttctgattttttaaattgaatgtttgattataggtctttcgtttcgtatggatggaagaaagggcattgaatttgaagatcagagaaaa---ggttat |
36492763 |
T |
|
| Q |
584 |
tcatgatctgtatgaaaggatggcttcaccctttttaaattttgggggttttgttgttcagaaaaattacattcatgtacaaaaatttgcaactcatata |
683 |
Q |
| |
|
|||| || ||||| |||| || ||||||||| |||||||||||||||||| ||||| ||||||||| ||| |||||||||||| ||||||||||||| |
|
|
| T |
36492764 |
tcatcatttgtataaaagtatagcttcacccgttttaaattttgggggtt--gttgtat-gaaaaattatatttatgtacaaaaatgtgcaactcatata |
36492860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 241 - 328
Target Start/End: Complemental strand, 31656414 - 31656327
Alignment:
| Q |
241 |
gaagagcttttcttgtggttacctgttaaagatatctttgttgtggatccatcttctggtgtaattctcattgatattggttttgctt |
328 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| |||||| ||||| ||||||||| | |||||| |||| |||||| |||||| |
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|
| T |
31656414 |
gaagagctttttgtttggttacctgttaaagatatcattgttgatgatccttcttctggtttgattctctttgacattggtcttgctt |
31656327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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