View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15454_low_1 (Length: 1016)

Name: NF15454_low_1
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15454_low_1
NF15454_low_1
[»] chr5 (19 HSPs)
chr5 (489-998)||(32304902-32305422)
chr5 (633-998)||(32365548-32365916)
chr5 (1-382)||(32305532-32305934)
chr5 (593-998)||(32318454-32318881)
chr5 (1-105)||(10721798-10721902)
chr5 (18-105)||(16753018-16753104)
chr5 (1-91)||(17260352-17260443)
chr5 (1-104)||(28494857-28494960)
chr5 (1-104)||(41834488-41834592)
chr5 (1-91)||(22651371-22651461)
chr5 (1-92)||(27307086-27307177)
chr5 (6-104)||(4966829-4966927)
chr5 (2-92)||(13557017-13557107)
chr5 (3-104)||(4967201-4967304)
chr5 (3-104)||(38900657-38900758)
chr5 (23-104)||(28595193-28595274)
chr5 (40-104)||(20260938-20261002)
chr5 (1-60)||(20266344-20266404)
chr5 (40-92)||(22651780-22651832)
[»] chr2 (8 HSPs)
chr2 (2-104)||(28143460-28143562)
chr2 (1-104)||(2190504-2190609)
chr2 (1-104)||(31797207-31797310)
chr2 (2-104)||(14942274-14942379)
chr2 (3-104)||(42192253-42192354)
chr2 (6-104)||(11540073-11540171)
chr2 (6-92)||(25336034-25336121)
chr2 (3-60)||(43160066-43160124)
[»] chr7 (13 HSPs)
chr7 (1-105)||(33880632-33880737)
chr7 (1-104)||(34595202-34595305)
chr7 (3-92)||(39136711-39136800)
chr7 (3-104)||(49064047-49064148)
chr7 (1-53)||(34594647-34594699)
chr7 (2-104)||(35578912-35579014)
chr7 (1-93)||(4477726-4477818)
chr7 (1-92)||(9393761-9393852)
chr7 (5-104)||(5334253-5334352)
chr7 (3-92)||(9394162-9394251)
chr7 (3-60)||(16081731-16081788)
chr7 (1-60)||(45815398-45815459)
chr7 (1-68)||(45815495-45815563)
[»] chr1 (16 HSPs)
chr1 (5-104)||(23526671-23526770)
chr1 (4-104)||(50926674-50926774)
chr1 (1-104)||(29021293-29021398)
chr1 (18-92)||(48173773-48173847)
chr1 (1-104)||(44291314-44291420)
chr1 (18-102)||(17088161-17088244)
chr1 (3-104)||(39485078-39485179)
chr1 (1-89)||(9833581-9833670)
chr1 (18-91)||(29020906-29020979)
chr1 (5-104)||(23526964-23527063)
chr1 (4-104)||(50926243-50926345)
chr1 (1-92)||(44802600-44802692)
chr1 (1-104)||(45048565-45048668)
chr1 (42-104)||(25274769-25274831)
chr1 (6-92)||(52335945-52336031)
chr1 (27-92)||(6224722-6224787)
[»] scaffold0007 (2 HSPs)
scaffold0007 (2-104)||(205798-205900)
scaffold0007 (18-104)||(210784-210870)
[»] scaffold0108 (2 HSPs)
scaffold0108 (1-104)||(15126-15229)
scaffold0108 (1-105)||(15528-15632)
[»] chr3 (15 HSPs)
chr3 (1-104)||(36701525-36701629)
chr3 (1-105)||(2323391-2323495)
chr3 (3-104)||(52237249-52237350)
chr3 (1-92)||(27200121-27200212)
chr3 (3-60)||(37847251-37847308)
chr3 (1-105)||(43222402-43222506)
chr3 (1-104)||(50900957-50901060)
chr3 (18-105)||(37076122-37076208)
chr3 (1-104)||(50900545-50900649)
chr3 (3-104)||(25534903-25535005)
chr3 (42-105)||(27199714-27199777)
chr3 (1-90)||(8874114-8874205)
chr3 (3-104)||(40839084-40839185)
chr3 (1-92)||(49408210-49408302)
chr3 (31-104)||(33412614-33412687)
[»] chr8 (7 HSPs)
chr8 (9-104)||(28876916-28877011)
chr8 (5-104)||(35427246-35427345)
chr8 (40-104)||(42035785-42035849)
chr8 (6-60)||(599589-599643)
chr8 (18-105)||(7910628-7910714)
chr8 (6-92)||(7911051-7911137)
chr8 (3-61)||(10047068-10047126)
[»] chr4 (11 HSPs)
chr4 (1-104)||(229589-229692)
chr4 (3-104)||(23986533-23986635)
chr4 (1-92)||(24336192-24336284)
chr4 (1-60)||(18965197-18965256)
chr4 (2-104)||(229174-229276)
chr4 (3-103)||(35193322-35193422)
chr4 (2-92)||(24335786-24335877)
chr4 (1-102)||(17503989-17504090)
chr4 (6-92)||(33689854-33689939)
chr4 (18-104)||(51309952-51310038)
chr4 (1-105)||(40160520-40160624)
[»] chr6 (7 HSPs)
chr6 (1-80)||(11523721-11523802)
chr6 (1-92)||(35163209-35163300)
chr6 (1-92)||(35163615-35163708)
chr6 (1-104)||(835407-835510)
chr6 (1-60)||(33095771-33095831)
chr6 (6-62)||(28636347-28636402)
chr6 (20-92)||(32836032-32836103)
[»] scaffold0097 (1 HSPs)
scaffold0097 (6-104)||(46279-46378)
[»] scaffold0712 (1 HSPs)
scaffold0712 (1-60)||(6825-6885)
[»] scaffold0709 (1 HSPs)
scaffold0709 (1-60)||(6843-6903)


Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 489 - 998
Target Start/End: Complemental strand, 32305422 - 32304902
Alignment:
Q  489 tagaacaagatatctcattcttagagagttattctagcctagtatattttcaannnnnnnatcttatgctctcgactactaattgtttagttctctattg 588  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| |||||||||||||||||||||    
T  32305422 tagaataagatatctcattcttagagagttattctagcctagtatattttcaatttttttatcttatgctctcgactattaattgtttagttctctattg 32305323  T
Q  589 tttgtaatatagtattacaaatttattgg-atcttcttccaattaatatgtatcatacatatttctcaccattctcattaatattgatttgtaaaatact 687  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32305322 tttgtaatatagtattacaaatttattgggaccttcttccaattaatatgtatcatacatatttctcaccattctcattaatattgatttgtaaaatact 32305223  T
Q  688 ttcaactgaatcttcatctctttcaaaaatgtgtagtttgatgtgtatctactgtgctgcaacgttatgtatgctaatgacaaagactcaagaccttacc 787  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32305222 ttcaactgaatcttcatctctttcaaaaatgtgtagtttgatgtgtatctactgtgctgcaacgttatgtatgctaatgacaaagactcaagaccttacc 32305123  T
Q  788 aagtggtatgaacaaattaatagcaagccttattttgataattttagtttactta-------taagc-ttc---aattgaaataatgtatactattttgt 876  Q
    ||||  |||||  |||||||||||||||  |||||||| ||||||||||||  ||       ||  | |||   |||  |||||||||||||||||||||    
T  32305122 aagt-atatgactaaattaatagcaagctatattttgagaattttagtttaaataatgtatctatccattcaaaaatataaataatgtatactattttgt 32305024  T
Q  877 acaacatgatttctaacaggctgaagctatacaaagtgttgaaataagggtttttgaagatataagtgttgatggccttcaacgttttcatttggaatct 976  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32305023 acaacataatttctaacaggctgaagctatacaaagtgttgcaataagggtttttgaagatataagtgttgatggctttcaacgttttcatttggaatct 32304924  T
Q  977 ttacccccaaatgcaccattag 998  Q
    |||||  |||||||||||||||    
T  32304923 ttaccaacaaatgcaccattag 32304902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 633 - 998
Target Start/End: Original strand, 32365548 - 32365916
Alignment:
Q  633 atatgtatcatacatatttctcaccattctcattaatattgatttgtaaaatactttcaactgaatcttcatctctttcaaaaatgtgtagtttgatgtg 732  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||    
T  32365548 atatgtatcatttatatttctcaccattctcattaatattgatttgtaaaatactttcaactgaatcttcatctctttgaatgatgtgtagtttgatgtg 32365647  T
Q  733 tatctactgtgctgcaacgttatgtatgctaatgacaaagactcaagaccttaccaagtggtatgaacaaattaatagcaagcc--ttattttgataatt 830  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||   |||||||| ||||    
T  32365648 tatctactgtgctgcaacgttatgtatgctaatgacaaagactcaagaccttagcaagtggtatgaccaaattaatatcaagccatatattttgagaatt 32365747  T
Q  831 ttag-tttacttataagcttcaattgaaataatgtatactattttgtacaacatgatttctaacaggctgaagctatacaaagtgttgaaataagggttt 929  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  32365748 ttagttttacttataagcttcaattaaaataatgtatactattttgtacaacataatttctaacaggctgaagctatacaaagtgttgcaataagggttt 32365847  T
Q  930 ttgaagatataagtgttgatggccttcaacgttttcatttggaatctttacccccaaatgcaccattag 998  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||    
T  32365848 ttgaagatataagtgttgatggctttcaacgttttcatttggaatctttacccacagatgcaccattag 32365916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 32305934 - 32305532
Alignment:
Q  1 ggtaggactaaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgacc 100  Q
    ||||||||||||||||||||||||||||| |||||| | ||||||||||||||| ||||| | |||||||||||  ||||||| |||||||| |||||||    
T  32305934 ggtaggactaaaactgcaaaaacatgatagtttagggacgattttgttcgatttaaaagaggtagaacaattttcgtgagctgatcaaaatgcgatgacc 32305835  T
Q  101 aaaaagggttggcatgaggg---------------------taaagctattaaggccgttttcttaggcctcttctagaaagggtttgatggccaagagg 179  Q
    ||||||||||||||||||||                     |||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  32305834 aaaaagggttggcatgagggcaaaaagggttggcatgagggtaaagctactaagaccgttttcttaggcctcttctagaaagggtttgatggctaagagg 32305735  T
Q  180 aattgatggttgtgaaaaattgtgaacaatttttggttatttatgaaagaactttttccactctctaaaatcatttaagaagtatacatgtttaaaagaa 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32305734 aattgatggttgtgaaaaattgtgaacaatttttggttatttatgcaagaactttttccactctctaaaatcatttaagaagtatacatgtttaaaagaa 32305635  T
Q  280 tattgtgtctttcagatcatgtataattcaaaacgaaaacaaaaatacaagtgttatctttaaaattggaaatttgaaacagttttatataacatattta 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32305634 tattgtgtctttcagatcatgtataattcaaaacgaaaacaaaaatacaagtgttatctttaaaattggaaatttgaaacagttttatataacatattta 32305535  T
Q  380 taa 382  Q
    |||    
T  32305534 taa 32305532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 593 - 998
Target Start/End: Original strand, 32318454 - 32318881
Alignment:
Q  593 taatatagtattacaaatttattgg-atcttcttccaattaatatgtatcatac-------atatttctcaccattctcattaatattgatttgtaaaat 684  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||       |||||||| |||||||||||||||||||| |||||||||    
T  32318454 taatatagtattacaaatttattgggaccttcttccaattaatatgtatcatacattatacatatttctgaccattctcattaatattgacttgtaaaat 32318553  T
Q  685 actttcaactgaatcttcatctctttcaaaaatgtgtagtttgatgtgtatctactgtgctgcaacgttatgtatgctaatgacaaagactcaagacctt 784  Q
    ||||| |||||||| ||||||||||| ||  | |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  32318554 actttgaactgaatattcatctctttgaatgacgtgtagtttgatgtgtatctactgtgctgcaacgctatgtatgctaatgacaaatactcaagacctt 32318653  T
Q  785 accaagtggtatgaacaaattaatagcaagccttattttgataattttagtttacttataagcttcaatt--------------gaaataatgtatacta 870  Q
    |||||||||||||| |||||||||| |||||| |||||||| ||||||||||||||||||||| ||||||               |||||||||||||||    
T  32318654 accaagtggtatgaccaaattaatatcaagccatattttgagaattttagtttacttataagcatcaattaaaatatcaaactataaataatgtatacta 32318753  T
Q  871 ttttgtacaacatgatttctaacaggctgaagctatacaaagtgttgaaataagggtttttgaagatataagtgttgatggccttcaacgttttcatttg 970  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32318754 ttttgtacaacataatttctaacaggctgaagctatacaaagtgttgcaataagggtttttgaagatataagtgttgatggctttcaacgttttcatttg 32318853  T
Q  971 gaatctttacccccaaatgcaccattag 998  Q
    |||||||||||| |||||||||||||||    
T  32318854 gaatctttacccacaaatgcaccattag 32318881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 10721902 - 10721798
Alignment:
Q  1 ggtaggactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgac 99  Q
    |||||||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||  ||  || |||||  ||||||||||||||||||| |||    
T  10721902 ggtaggactaaaactgcaaaaaacatgatagtttagg-acgattttgttcgatttgaaagagacaagaccattttcgtgagctggtcaaaatgtgaggac 10721804  T
Q  100 caaaaa 105  Q
    ||||||    
T  10721803 caaaaa 10721798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 16753018 - 16753104
Alignment:
Q  18 aaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgaccaaaaa 105  Q
    ||||||||||||||||||| ||| ||| ||||||||||||||| ||||||| |||||  |||| ||||||||||| ||||||||||||    
T  16753018 aaaaacatgataatttagg-atggtttcgttcgatttgaaagaggcagaaccattttcgtgagttggtcaaaatgcgatgaccaaaaa 16753104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 17260443 - 17260352
Alignment:
Q  1 ggtaggactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaat 91  Q
    |||||||||||||||||||||| |||||||||||| | |  |||||||||||||||||||| ||||||| |||||| ||| ||| |||||||    
T  17260443 ggtaggactaaaactgcaaaaaacatgataatttatggacaattttgttcgatttgaaagatgcagaaccatttttgtgaactgatcaaaat 17260352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 28494960 - 28494857
Alignment:
Q  1 ggtaggactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgac 99  Q
    |||||||||||||||||||||| ||||||| ||||||   | ||||||||||||||||||| ||||||| |||||  ||| ||||||||||||| | |||    
T  28494960 ggtaggactaaaactgcaaaaaacatgatagtttaggacag-ttttgttcgatttgaaagaggcagaaccattttcctgaactggtcaaaatgtaaggac 28494862  T
Q  100 caaaa 104  Q
    |||||    
T  28494861 caaaa 28494857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 41834488 - 41834592
Alignment:
Q  1 ggtaggactaaaactgcaaaaa--catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatga 98  Q
    ||||||||||||||||||||||  ||||||| |||||| | | ||||||||||| ||||||| |||| || |||||  |||||||||||||||| || ||    
T  41834488 ggtaggactaaaactgcaaaaaaacatgatagtttagg-acggttttgttcgatctgaaagaggcaggaccattttcgtgagctggtcaaaatgcgagga 41834586  T
Q  99 ccaaaa 104  Q
    ||||||    
T  41834587 ccaaaa 41834592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 22651461 - 22651371
Alignment:
Q  1 ggtaggactaaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaat 91  Q
    ||||||||||||||||||||||||||||| |||| | ||| ||||||| ||||| ||||| |||  || ||||   |||||||||||||||    
T  22651461 ggtaggactaaaactgcaaaaacatgatagtttaaggatggttttgtttgatttaaaagaggcatgaccatttccgtgagctggtcaaaat 22651371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 27307177 - 27307086
Alignment:
Q  1 ggtaggactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatg 92  Q
    |||| ||||||||||||||||| ||||||| |||||| |||||||||||| ||||||||||| ||  || ||||| || || |||||||||||    
T  27307177 ggtaagactaaaactgcaaaaaacatgatagtttagg-atgattttgttcaatttgaaagaaacatgaccattttcataagttggtcaaaatg 27307086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 4966927 - 4966829
Alignment:
Q  6 gactaaaactgc-aaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgaccaaaa 104  Q
    |||||||||||| |||||||| ||| |||||| | ||||||||||||||| ||||| |||| || |||||  |||| ||||||||||| || ||||||||    
T  4966927 gactaaaactgctaaaaacat-atagtttagggacgattttgttcgatttaaaagaggcagtactattttcgtgagttggtcaaaatgcgaggaccaaaa 4966829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 13557107 - 13557017
Alignment:
Q  2 gtaggactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatg 92  Q
    ||||||||||||||||||||| ||||||| |||| | | ||||||||| ||||||||||| |||  || |||||  ||||||||||||||||    
T  13557107 gtaggactaaaactgcaaaaaacatgatagtttaag-acgattttgtttgatttgaaagaggcatgaccattttcgtgagctggtcaaaatg 13557017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 4967201 - 4967304
Alignment:
Q  3 taggactaaaactgcaaaaa---catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgac 99  Q
    ||||||||||||||||||||   ||| ||| |||||| | ||||||||||||||| ||||| | |  || |||||| |||| |||||||||||||| |||    
T  4967201 taggactaaaactgcaaaaaaaacat-atagtttagggacgattttgttcgatttaaaagaggtaagaccatttttgtgagttggtcaaaatgtgaggac 4967299  T
Q  100 caaaa 104  Q
    |||||    
T  4967300 caaaa 4967304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 38900758 - 38900657
Alignment:
Q  3 taggactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgacca 101  Q
    |||||||||||||||||||| ||| |||||||||| | ||||||||||||||| ||||| | || |  |||||  |||| ||||||||||| || |||||    
T  38900758 taggactaaaactgcaaaaaacat-ataatttagggacgattttgttcgatttaaaagaggtaggatcattttcgtgagttggtcaaaatgcgaggacca 38900660  T
Q  102 aaa 104  Q
    |||    
T  38900659 aaa 38900657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 28595274 - 28595193
Alignment:
Q  23 catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgaccaaaa 104  Q
    ||||||| |||||| | ||||||||||| |||||||||||||  || |||||| | |||||||||||||  || ||||||||    
T  28595274 catgatagtttagggacgattttgttcgttttgaaagaagcatgaccatttttgtaagctggtcaaaatacgaggaccaaaa 28595193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 20261002 - 20260938
Alignment:
Q  40 gattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgaccaaaa 104  Q
    ||||||||| ||||||||||| || | || ||||| ||||||| |||||||||||| ||||||||    
T  20261002 gattttgtttgatttgaaagaggcgggaccattttcatgagctagtcaaaatgtgaggaccaaaa 20260938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 20266344 - 20266404
Alignment:
Q  1 ggtaggactaaaactgcaaaaac-atgataatttaggtatgattttgttcgatttgaaaga 60  Q
    ||||||||||||||| ||| ||| |||||| |||||| | |||||||||||||||||||||    
T  20266344 ggtaggactaaaactacaacaaccatgatagtttagggacgattttgttcgatttgaaaga 20266404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 22651780 - 22651832
Alignment:
Q  40 gattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatg 92  Q
    ||||||||||||||||||| | ||||||| |||||  ||||||||||||||||    
T  22651780 gattttgttcgatttgaaaaaggcagaaccattttcgtgagctggtcaaaatg 22651832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 7e-27; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 28143460 - 28143562
Alignment:
Q  2 gtaggactaaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgacca 101  Q
    |||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||| |||| || |||||  |||||||||||||||| || |||||    
T  28143460 gtaggactaaaactgcaaaaacatgatagtttagggacgattttgttcgatttgaaagaggcaggaccattttcgtgagctggtcaaaatgcgaggacca 28143559  T
Q  102 aaa 104  Q
    |||    
T  28143560 aaa 28143562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 2190504 - 2190609
Alignment:
Q  1 ggtaggactaaaactgcaaaaa--catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatga 98  Q
    ||||||||||||||||||||||  | |||||||||||| | ||||||||||||||||||| | |||| || | |||  |||||||||||||||| |||||    
T  2190504 ggtaggactaaaactgcaaaaaagcgtgataatttagggacgattttgttcgatttgaaaaaggcaggaccaatttcgtgagctggtcaaaatgcgatga 2190603  T
Q  99 ccaaaa 104  Q
    ||||||    
T  2190604 ccaaaa 2190609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 31797207 - 31797310
Alignment:
Q  1 ggtaggactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgac 99  Q
    |||||||||||||||||||||| ||| ||| |||||| | | ||||||||||||||||||| |||  || |||||  ||||||||||||||||||| |||    
T  31797207 ggtaggactaaaactgcaaaaaacat-atagtttagggacggttttgttcgatttgaaagaggcatgaccattttcgtgagctggtcaaaatgtgaggac 31797305  T
Q  100 caaaa 104  Q
    |||||    
T  31797306 caaaa 31797310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 14942274 - 14942379
Alignment:
Q  2 gtaggactaaaactgcaaaa---acatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatga 98  Q
    ||||||||||||||||||||   ||||||||||||| | |  ||||||||||||||||||||  ||  || |||||  |||||||||||||||| || ||    
T  14942274 gtaggactaaaactgcaaaaaaaacatgataatttatggacaattttgttcgatttgaaagagacaagaccattttcgtgagctggtcaaaatgcgaaga 14942373  T
Q  99 ccaaaa 104  Q
    ||||||    
T  14942374 ccaaaa 14942379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 42192354 - 42192253
Alignment:
Q  3 taggactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgacca 101  Q
    |||||||||||||||||||| ||| ||| |||||| | ||||||||||||||| ||||| | || || |||||  |||| |||||||||||||| |||||    
T  42192354 taggactaaaactgcaaaaaacat-atagtttagggacgattttgttcgatttaaaagaggtaggaccattttcgtgagttggtcaaaatgtgaggacca 42192256  T
Q  102 aaa 104  Q
    |||    
T  42192255 aaa 42192253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 11540073 - 11540171
Alignment:
Q  6 gactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgaccaaaa 104  Q
    ||||||||||||||||| ||| ||| |||| | | ||||||||||||||| ||||| | || || |||||  |||| ||||||||||| |||||||||||    
T  11540073 gactaaaactgcaaaaaacat-atagtttatggacgattttgttcgatttaaaagaggtaggaccattttcgtgagttggtcaaaatgcgatgaccaaaa 11540171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 25336034 - 25336121
Alignment:
Q  6 gactaaaactgcaaaaacatg-ataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatg 92  Q
    ||||||||||||||||| ||  |||||||||| | ||||||||||||||| ||||||| || || | |||  |||| |||||||||||    
T  25336034 gactaaaactgcaaaaaaatatataatttagggacgattttgttcgatttaaaagaagtaggaccaatttcgtgagttggtcaaaatg 25336121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 43160124 - 43160066
Alignment:
Q  3 taggactaaaactgcaaaaacatg-ataatttaggtatgattttgttcgatttgaaaga 60  Q
    |||||||||||||||||||| ||| ||| |||||| | ||||||||||||||| |||||    
T  43160124 taggactaaaactgcaaaaaaatgtatagtttagggacgattttgttcgatttaaaaga 43160066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 7e-24; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 33880737 - 33880632
Alignment:
Q  1 ggtaggactaaaactgcaaaaac-atgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgac 99  Q
    ||||||||||||| ||||||||  ||||||||||||| | | ||||||||||||||||||| |||||||||||||| |||||||||||||||  || |||    
T  33880737 ggtaggactaaaagtgcaaaaaatatgataatttagggacggttttgttcgatttgaaagaggcagaacaatttttgtgagctggtcaaaatacgaggac 33880638  T
Q  100 caaaaa 105  Q
    ||||||    
T  33880637 caaaaa 33880632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 34595202 - 34595305
Alignment:
Q  1 ggtaggactaaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgacc 100  Q
    ||||| ||||||||||||||||||||||| |||||| | ||||||||||||||| ||||| |||| || |||||  |||| |||||||||||||| ||||    
T  34595202 ggtagcactaaaactgcaaaaacatgatagtttagggacgattttgttcgatttaaaagatgcaggaccattttcgtgagttggtcaaaatgtgaggacc 34595301  T
Q  101 aaaa 104  Q
    ||||    
T  34595302 aaaa 34595305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 39136800 - 39136711
Alignment:
Q  3 taggactaaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatg 92  Q
    ||||||||||| |||| |||||||||| |||||| | |||||||||||||||||||||  |||||| |||||  ||||||||||||||||    
T  39136800 taggactaaaagtgcataaacatgatagtttagggacgattttgttcgatttgaaagagtcagaaccattttcgtgagctggtcaaaatg 39136711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 49064148 - 49064047
Alignment:
Q  3 taggactaaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgaccaa 102  Q
    ||||||||||| ||||||||||||||| |||| | | |||||||||| |||||||||| |||  || |||||  |||||||||||||||  || ||||||    
T  49064148 taggactaaaagtgcaaaaacatgatagtttatggaagattttgttctatttgaaagaggcaataccattttcgtgagctggtcaaaatacgaggaccaa 49064049  T
Q  103 aa 104  Q
    ||    
T  49064048 aa 49064047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 34594699 - 34594647
Alignment:
Q  1 ggtaggactaaaactgcaaaaacatgataatttaggtatgattttgttcgatt 53  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||| ||||    
T  34594699 ggtaggactaaaactgcaaaaacatgatagtttagggatgattttgtttgatt 34594647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 35579014 - 35578912
Alignment:
Q  2 gtaggactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgacc 100  Q
    |||||| |||||||||||||| ||||||| |||| | | | ||||||||||||||||||  |||| || |||||| ||||||||||||||||  ||||||    
T  35579014 gtaggattaaaactgcaaaaaacatgatagtttatg-acggttttgttcgatttgaaagtggcaggaccatttttgtgagctggtcaaaatgcaatgacc 35578916  T
Q  101 aaaa 104  Q
    ||||    
T  35578915 aaaa 35578912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 4477818 - 4477726
Alignment:
Q  1 ggtaggactaaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgt 93  Q
    ||||||||||||||||||||||||||||| |||||| | |||||| ||| |||| ||||| || | || |||||  |||  ||||||||||||    
T  4477818 ggtaggactaaaactgcaaaaacatgatagtttagggacgattttattcaatttaaaagaggcgggaccattttcgtgaattggtcaaaatgt 4477726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 9393852 - 9393761
Alignment:
Q  1 ggtaggactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatg 92  Q
    |||||||||||||| ||||||| ||||||| |||||| | | ||||||||||||||||||| |||  ||||||||  ||||||| ||||||||    
T  9393852 ggtaggactaaaacagcaaaaaacatgatagtttagg-acggttttgttcgatttgaaagaggcaagacaattttcgtgagctgatcaaaatg 9393761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 5334253 - 5334352
Alignment:
Q  5 ggactaaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgaccaaaa 104  Q
    ||||||||||||||||||    ||| |||||| | ||||||||||||||| ||||| | || || |||||  |||| |||||||||||||| ||||||||    
T  5334253 ggactaaaactgcaaaaaatatatagtttagggacgattttgttcgatttaaaagaggtaggactattttcgtgagttggtcaaaatgtgaggaccaaaa 5334352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 9394162 - 9394251
Alignment:
Q  3 taggactaaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatg 92  Q
    ||||||||||||||||||||    ||| |||||| | | ||||||||||||||||| | | || || |||||| ||||||||||||||||    
T  9394162 taggactaaaactgcaaaaaatatatagtttagggacggttttgttcgatttgaaaaaggtaggaccatttttgtgagctggtcaaaatg 9394251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 16081731 - 16081788
Alignment:
Q  3 taggactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaaga 60  Q
    |||||||||||||||||||| ||| ||| |||||| ||||||||||||||||| |||||    
T  16081731 taggactaaaactgcaaaaaacat-atagtttagggatgattttgttcgatttaaaaga 16081788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 45815459 - 45815398
Alignment:
Q  1 ggtaggactaaaactgcaaaaa--catgataatttaggtatgattttgttcgatttgaaaga 60  Q
    |||| |||||||||||||||||  ||||||| |||||| | | |||||||||||||||||||    
T  45815459 ggtaagactaaaactgcaaaaaaacatgatagtttagggacggttttgttcgatttgaaaga 45815398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 45815495 - 45815563
Alignment:
Q  1 ggtaggactaaaactgcaaaaa--catgataatttaggtatgattttgttcgatttgaaagaagcagaac 68  Q
    ||||| ||||||||||||||||  ||||||| |||||| | ||||||||||||||| ||||| |||||||    
T  45815495 ggtagaactaaaactgcaaaaaaacatgatagtttagg-acgattttgttcgatttaaaagaggcagaac 45815563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 1e-22; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 23526770 - 23526671
Alignment:
Q  5 ggactaaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgaccaaaa 104  Q
    |||||||||||||||||| |||||| | |||| ||||||||||||||||| ||||| |||| || |||||  ||||||||||||||||||| ||||||||    
T  23526770 ggactaaaactgcaaaaaaatgatagtctagggatgattttgttcgatttaaaagaggcaggaccattttcgtgagctggtcaaaatgtgaggaccaaaa 23526671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 50926674 - 50926774
Alignment:
Q  4 aggactaaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgaccaaa 103  Q
    ||||||||||||||||||| |||||| |||||| | | |||||||||||||||||||  | | || |||||  |||||||||||||||| ||||||||||    
T  50926674 aggactaaaactgcaaaaaaatgatagtttagggacggttttgttcgatttgaaagagacgggaccattttcgtgagctggtcaaaatgcgatgaccaaa 50926773  T
Q  104 a 104  Q
    |    
T  50926774 a 50926774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 29021293 - 29021398
Alignment:
Q  1 ggtaggactaaaactgcaaaaa--catgataatttaggtatgattttgttcgatttgaaagaagca-gaacaatttttatgagctggtcaaaatgtgatg 97  Q
    |||| |||||||||||||||||  | |||||||||||| | ||||||||||||||||||||| ||| |||| |||||  ||||||||||||||||||| |    
T  29021293 ggtaagactaaaactgcaaaaaaccgtgataatttagggacgattttgttcgatttgaaagaggcatgaac-attttcgtgagctggtcaaaatgtgagg 29021391  T
Q  98 accaaaa 104  Q
    |||||||    
T  29021392 accaaaa 29021398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 48173847 - 48173773
Alignment:
Q  18 aaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatg 92  Q
    |||||||||||||||||||   ||||||||||||||||||||| ||||||| |||||| ||| ||||||||||||    
T  48173847 aaaaacatgataatttagggtcgattttgttcgatttgaaagaggcagaaccatttttgtgaactggtcaaaatg 48173773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 44291420 - 44291314
Alignment:
Q  1 ggtaggactaaaactgcaaaaa---catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatg 97  Q
    |||| |||||||||||||||||   ||||||| |||| | | |||||||||| |||||||||| ||| ||| |||||  ||||||||||||||||||| |    
T  44291420 ggtatgactaaaactgcaaaaaaaacatgatagtttatggacgattttgttcaatttgaaagaggcataaccattttcgtgagctggtcaaaatgtgagg 44291321  T
Q  98 accaaaa 104  Q
    |||||||    
T  44291320 accaaaa 44291314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 17088244 - 17088161
Alignment:
Q  18 aaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgaccaa 102  Q
    |||||||||||| |||||| | | ||||||||||||||||||| ||| ||| |||||  |||||||||||||||| |||||||||    
T  17088244 aaaaacatgatagtttagg-acggttttgttcgatttgaaagaggcaaaaccattttcgtgagctggtcaaaatgcgatgaccaa 17088161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 39485179 - 39485078
Alignment:
Q  3 taggactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgacca 101  Q
    |||||||||||||||||||| ||| ||| |||||| | ||||||||||||||||||||| | || || |||||  |||||| ||||||||| || |||||    
T  39485179 taggactaaaactgcaaaaaacat-atagtttagggacgattttgttcgatttgaaagaggtaggaccattttcgtgagctagtcaaaatgcgaggacca 39485081  T
Q  102 aaa 104  Q
    |||    
T  39485080 aaa 39485078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 9833581 - 9833670
Alignment:
Q  1 ggtaggactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaa 89  Q
    |||||||||||||||||||||| ||| ||| |||||| | ||||||||||||||||||||| |||  || |||||  |||| ||||||||    
T  9833581 ggtaggactaaaactgcaaaaaacataatattttagggacgattttgttcgatttgaaagaggcatgactattttcgtgagttggtcaaa 9833670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 29020979 - 29020906
Alignment:
Q  18 aaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaat 91  Q
    ||||||||||||||||| | ||||||||||||||||| |||||  ||  || |||||||||||||| |||||||    
T  29020979 aaaaacatgataatttaaggatgattttgttcgatttaaaagagacatgaccatttttatgagctgatcaaaat 29020906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 23526964 - 23527063
Alignment:
Q  5 ggactaaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgaccaaaa 104  Q
    |||||||||||||||||| |||||| |||||  | | ||||||||||||| ||| | |||  || ||||| |||||||| ||||||||||| || |||||    
T  23526964 ggactaaaactgcaaaaaaatgatagtttagagacggttttgttcgatttaaaaaaggcatgaccattttcatgagctgatcaaaatgtgaggatcaaaa 23527063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 50926345 - 50926243
Alignment:
Q  4 aggactaaaactgcaaaaaca--tgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgacca 101  Q
    ||||||||||||||||||| |  ||||| |||||| | ||||||||||||||||||||| | |  |  |||||  |||||||||||||||| || |||||    
T  50926345 aggactaaaactgcaaaaaaaaatgatagtttagggacgattttgttcgatttgaaagaggtatgattattttcgtgagctggtcaaaatgggaggacca 50926246  T
Q  102 aaa 104  Q
    |||    
T  50926245 aaa 50926243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 44802600 - 44802692
Alignment:
Q  1 ggtaggactaaaactgcaaaa-acatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatg 92  Q
    ||||| ||||||||||||||| |||||||| |||||| | ||||||||||  ||||||||| |||  || | |||  ||||||||||||||||    
T  44802600 ggtagaactaaaactgcaaaaaacatgatagtttagggacgattttgttccgtttgaaagaggcatgaccactttcgtgagctggtcaaaatg 44802692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 45048565 - 45048668
Alignment:
Q  1 ggtaggactaaaactgc-aaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgac 99  Q
    ||||||||||||||||| |||||||||||| |||||| | | |||||||||||| |||||| | |  || |||||  ||| |||||||||||| || |||    
T  45048565 ggtaggactaaaactgcaaaaaacatgatagtttagg-acggttttgttcgattggaaagaggtatgaccattttcgtgaactggtcaaaatgcgaggac 45048663  T
Q  100 caaaa 104  Q
    |||||    
T  45048664 caaaa 45048668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 25274831 - 25274769
Alignment:
Q  42 ttttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgaccaaaa 104  Q
    ||||||||||||||||||| |||  || |||||  |||||||||||||||| || ||||||||    
T  25274831 ttttgttcgatttgaaagaggcatgaccattttcgtgagctggtcaaaatgcgaggaccaaaa 25274769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 52335945 - 52336031
Alignment:
Q  6 gactaaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatg 92  Q
    ||||||||||||||||| |  ||| |||||| | ||||||||||||||| ||||| | || || | ||| ||||| |||||||||||    
T  52335945 gactaaaactgcaaaaaaaatatagtttagggacgattttgttcgatttaaaagaggtaggaccaatttcatgagttggtcaaaatg 52336031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 6224787 - 6224722
Alignment:
Q  27 ataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatg 92  Q
    |||||||| | | ||||||||||||||| ||| ||  ||||| ||||||||||| |||||||||||    
T  6224787 ataatttaaggacgattttgttcgatttaaaaaaacaagaaccatttttatgagttggtcaaaatg 6224722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 55; Significance: 4e-22; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 205798 - 205900
Alignment:
Q  2 gtaggactaaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgacca 101  Q
    |||||||||||||||||||||||||||| |||||| | | ||||||||||||||||||| |||| || |||||  |||| |||||||||||||| ||| |    
T  205798 gtaggactaaaactgcaaaaacatgatagtttagggacggttttgttcgatttgaaagaggcaggaccattttcgtgagttggtcaaaatgtgaggacta 205897  T
Q  102 aaa 104  Q
    |||    
T  205898 aaa 205900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 210784 - 210870
Alignment:
Q  18 aaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgaccaaaa 104  Q
    ||||| |||||| |||||| | | ||||||||||||||||||| |||| || ||||| ||||| |||||||||||||| ||||||||    
T  210784 aaaaaaatgatagtttagggacggttttgttcgatttgaaagaggcaggaccattttcatgagttggtcaaaatgtgaggaccaaaa 210870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 52; Significance: 3e-20; HSPs: 2)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 15229 - 15126
Alignment:
Q  1 ggtaggactaaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgacc 100  Q
    |||| ||| |||||||||||||||||||| ||||||  || ||||||||||||||||||| ||||||  |||||   ||||||||||||||| |||||||    
T  15229 ggtaagacaaaaactgcaaaaacatgatagtttagggttgtttttgttcgatttgaaagaggcagaatcattttcgcgagctggtcaaaatgcgatgacc 15130  T
Q  101 aaaa 104  Q
    ||||    
T  15129 aaaa 15126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 15528 - 15632
Alignment:
Q  1 ggtaggactaaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgacc 100  Q
    |||| |||||||||| ||||||||||||| |||||| |   |||||||||||||||||||  ||| || |||||  ||||||| |||||||| ||  |||    
T  15528 ggtatgactaaaactacaaaaacatgatagtttagggacagttttgttcgatttgaaagagtcaggaccattttcgtgagctgatcaaaatgcgagaacc 15627  T
Q  101 aaaaa 105  Q
    |||||    
T  15628 aaaaa 15632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 2e-18; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 36701525 - 36701629
Alignment:
Q  1 ggtaggactaaaactgcaaaa-acatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgac 99  Q
    |||| |||||||||||||||| |||||||| |||||| |||||||||||||||||||||||  ||  || |||||  |||||||||||||||| || |||    
T  36701525 ggtatgactaaaactgcaaaaaacatgatagtttagggatgattttgttcgatttgaaagagacatgaccattttcgtgagctggtcaaaatgcgaggac 36701624  T
Q  100 caaaa 104  Q
    |||||    
T  36701625 caaaa 36701629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 2323495 - 2323391
Alignment:
Q  1 ggtaggactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgac 99  Q
    ||||||||||||| |||||||| ||||||| |||||| ||| ||||||||||||||||||| |||| | ||||||| ||| |||||||||||| || |||    
T  2323495 ggtaggactaaaattgcaaaaaacatgatagtttagg-atggttttgttcgatttgaaagaggcagtataatttttgtgaactggtcaaaatgcgaggac 2323397  T
Q  100 caaaaa 105  Q
     |||||    
T  2323396 aaaaaa 2323391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 52237249 - 52237350
Alignment:
Q  3 taggactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgacca 101  Q
    |||||||||||||||||||| ||| |||||||||| | ||||||||||||||| ||||| | || || |||||  |||| |||||||||||||| |||||    
T  52237249 taggactaaaactgcaaaaaacat-ataatttagggacgattttgttcgatttaaaagaggtaggaccattttcgtgagttggtcaaaatgtgaggacca 52237347  T
Q  102 aaa 104  Q
    |||    
T  52237348 aaa 52237350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 27200121 - 27200212
Alignment:
Q  1 ggtaggactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatg 92  Q
    |||| ||||||||||||||||| ||||||| |||||| | | | ||||||||||||||||| ||||||| |||||  ||||||||||||||||    
T  27200121 ggtatgactaaaactgcaaaaaacatgatagtttagg-acggtattgttcgatttgaaagaggcagaaccattttcgtgagctggtcaaaatg 27200212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 37847251 - 37847308
Alignment:
Q  3 taggactaaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaaga 60  Q
    ||||||||||||||||||||||||||| |||||| | |  ||||||||||||||||||    
T  37847251 taggactaaaactgcaaaaacatgatagtttagggacggctttgttcgatttgaaaga 37847308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 43222506 - 43222402
Alignment:
Q  1 ggtaggactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgac 99  Q
    ||||||| ||||| |||||||| ||| ||| |||||| | ||||||||||||||| |||||  || ||| |||||  |||| ||||||||||||||||||    
T  43222506 ggtaggattaaaaatgcaaaaaacat-atagtttagggacgattttgttcgatttaaaagagacataactattttcgtgagttggtcaaaatgtgatgac 43222408  T
Q  100 caaaaa 105  Q
    ||||||    
T  43222407 caaaaa 43222402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 50900957 - 50901060
Alignment:
Q  1 ggtaggactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgac 99  Q
    |||||||| ||||||||||||| ||| ||| |||||| | | |||||||||||||| |||| ||||  | |||||| |||||||||||||||| || |||    
T  50900957 ggtaggacaaaaactgcaaaaaacat-atagtttagggacggttttgttcgatttgtaagaggcagggccatttttgtgagctggtcaaaatgcgaggac 50901055  T
Q  100 caaaa 104  Q
    |||||    
T  50901056 caaaa 50901060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 37076122 - 37076208
Alignment:
Q  18 aaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgaccaaaaa 105  Q
    |||||||||||| |||||| | ||||||||||||||||||||| || | || |||||  ||||||| |||||||| || |||||||||    
T  37076122 aaaaacatgatagtttagg-acgattttgttcgatttgaaagaggcgggaccattttcgtgagctgatcaaaatgcgaggaccaaaaa 37076208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 50900649 - 50900545
Alignment:
Q  1 ggtaggactaaaactgc--aaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatga 98  Q
    |||||||||||||||||  |||||||||||| |||||| | | |||||||||||||||||||   || || |||||  ||||||| ||||||| ||| ||    
T  50900649 ggtaggactaaaactgcgaaaaaacatgatagtttagg-acggttttgttcgatttgaaagagttaggaccattttcgtgagctgatcaaaatttgaaga 50900551  T
Q  99 ccaaaa 104  Q
    ||||||    
T  50900550 ccaaaa 50900545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 25535005 - 25534903
Alignment:
Q  3 taggactaaaactgcaaaaa-catgataatttaggt-atgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgacc 100  Q
    |||||||||||||||||||| ||| ||||||||||  | ||||||||||||||| ||||| | || || ||||| ||||  ||||||||||| || ||||    
T  25535005 taggactaaaactgcaaaaaacat-ataatttaggggacgattttgttcgatttaaaagaggtaggaccattttcatgaattggtcaaaatgcgaggacc 25534907  T
Q  101 aaaa 104  Q
    ||||    
T  25534906 aaaa 25534903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 27199777 - 27199714
Alignment:
Q  42 ttttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgaccaaaaa 105  Q
    ||||||||||||||||||| |||  || |||||  |||||||||||||||| || |||||||||    
T  27199777 ttttgttcgatttgaaagaggcatgaccattttcgtgagctggtcaaaatgcgaggaccaaaaa 27199714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 8874114 - 8874205
Alignment:
Q  1 ggtaggactaaaactgcaaaaa---catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaa 90  Q
    ||||| ||||||||||||||||   ||| ||| |||||| | | ||||||||||||| |||||||||| || |||||  ||||||||||||||    
T  8874114 ggtagaactaaaactgcaaaaaaaacat-atagtttagggaaggttttgttcgatttaaaagaagcaggaccattttcgtgagctggtcaaaa 8874205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 40839084 - 40839185
Alignment:
Q  3 taggactaaaactgc-aaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgacca 101  Q
    ||||||||||||||| |||||||| ||| |||||| | ||||||||||||||| ||||| | |  || |||||  |||| | |||||||||||| |||||    
T  40839084 taggactaaaactgcaaaaaacat-atagtttagggacgattttgttcgatttaaaagaggtaagaccattttcgtgagtttgtcaaaatgtgaggacca 40839182  T
Q  102 aaa 104  Q
    |||    
T  40839183 aaa 40839185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 49408210 - 49408302
Alignment:
Q  1 ggtaggactaaaactgcaaaaa--catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatg 92  Q
    ||||||||||||||||||||||  ||||||| ||||||   | |||||||||||||||||||  || ||| |||||  |||| |||||||||||    
T  49408210 ggtaggactaaaactgcaaaaaaacatgatagtttaggacag-ttttgttcgatttgaaagagacacaaccattttcgtgagatggtcaaaatg 49408302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 33412614 - 33412687
Alignment:
Q  31 tttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgaccaaaa 104  Q
    |||||| | |||||||||||||| ||||||  |||||| |||||  ||||||| |||||||| || ||||||||    
T  33412614 tttagggacgattttgttcgattcgaaagagacagaaccattttcgtgagctgatcaaaatgcgaggaccaaaa 33412687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 7e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 28877011 - 28876916
Alignment:
Q  9 taaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgaccaaaa 104  Q
    ||||||| ||||||||||||| |||||| | ||||||||||||||||||||| ||||||  |||||  ||||||| |||||||| || ||||||||    
T  28877011 taaaactacaaaaacatgatagtttagggacgattttgttcgatttgaaagaggcagaattattttcgtgagctgatcaaaatgcgaggaccaaaa 28876916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 35427246 - 35427345
Alignment:
Q  5 ggactaaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgaccaaaa 104  Q
    ||||||||||||||||||    |||||||||| | ||||||||||| ||| ||||| | ||||| |||||  |||| ||||||||||| || ||||||||    
T  35427246 ggactaaaactgcaaaaaatatataatttagggacgattttgttcggtttaaaagaggtagaaccattttcgtgagttggtcaaaatgcgaggaccaaaa 35427345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 42035849 - 42035785
Alignment:
Q  40 gattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgaccaaaa 104  Q
    ||||||||||||||| ||||| | ||||| |||||  |||| |||||||||||||| ||||||||    
T  42035849 gattttgttcgatttaaaagaggtagaaccattttcgtgagttggtcaaaatgtgaggaccaaaa 42035785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 599643 - 599589
Alignment:
Q  6 gactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaaga 60  Q
    ||||||||||||||||| ||| |||||||||| ||||||||||||||||| |||||    
T  599643 gactaaaactgcaaaaaacat-ataatttagggatgattttgttcgatttaaaaga 599589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 7910714 - 7910628
Alignment:
Q  18 aaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgaccaaaaa 105  Q
    |||||||| |||||||||| | ||||||||||||||| ||||| | | ||| |||||  |||| || ||||||||||| |||||||||    
T  7910714 aaaaacat-ataatttagggacgattttgttcgatttaaaagaggtataaccattttcgtgagttgatcaaaatgtgaggaccaaaaa 7910628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 7911051 - 7911137
Alignment:
Q  6 gactaaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatg 92  Q
    |||||||||||||||||    ||| |||||| | ||||||||||||||| ||||| | ||||| |||||  |||| |||||||||||    
T  7911051 gactaaaactgcaaaaaatatatagtttagggacgattttgttcgatttaaaagaggtagaaccattttcgtgagttggtcaaaatg 7911137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 10047068 - 10047126
Alignment:
Q  3 taggactaaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaagaa 61  Q
    ||||| ||||||||||||||||||||| |||||  |  |||||||||||||| ||||||    
T  10047068 taggattaaaactgcaaaaacatgatagtttagagaccattttgttcgatttaaaagaa 10047126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 7e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 229589 - 229692
Alignment:
Q  1 ggtaggactaaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgacc 100  Q
    ||||||| ||||||||||||||||||||| |||| | | ||||||||| ||||||||||| |||  || |||||  |||||||||||||||| || ||||    
T  229589 ggtaggattaaaactgcaaaaacatgatagtttaaggacgattttgtttgatttgaaagaggcaagaccattttcgtgagctggtcaaaatgcgaagacc 229688  T
Q  101 aaaa 104  Q
    ||||    
T  229689 aaaa 229692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 23986635 - 23986533
Alignment:
Q  3 taggactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgacca 101  Q
    |||||||||||||||||||| ||||||| |||||| |   |||||||||||||||||||  ||  || |||||  ||||||||||||||||||| |||||    
T  23986635 taggactaaaactgcaaaaaacatgatagtttagggacagttttgttcgatttgaaagagacatgaccattttcgtgagctggtcaaaatgtgaggacca 23986536  T
Q  102 aaa 104  Q
    |||    
T  23986535 aaa 23986533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 24336192 - 24336284
Alignment:
Q  1 ggtaggactaaaactgcaaaa-acatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatg 92  Q
    |||||||||||||  |||||| ||||||||||||||| | | ||||||||||||||||||| |||| || |||||  |||||| |||||||||    
T  24336192 ggtaggactaaaagagcaaaaaacatgataatttaggaacggttttgttcgatttgaaagaggcaggaccattttcgtgagcttgtcaaaatg 24336284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 18965256 - 18965197
Alignment:
Q  1 ggtaggactaaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaaga 60  Q
    ||||| ||||||||||||||||||||||| |||| | | |||||||||||||||||||||    
T  18965256 ggtagaactaaaactgcaaaaacatgatagtttaaggacgattttgttcgatttgaaaga 18965197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 229276 - 229174
Alignment:
Q  2 gtaggactaaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgacca 101  Q
    |||| ||||||||||||||||||||||| |||| | | |||||||||| |||||||||| |||  || |||||   ||||||||||||||  || |||||    
T  229276 gtagaactaaaactgcaaaaacatgatagtttaaggacgattttgttcaatttgaaagaggcaagaccattttcgcgagctggtcaaaatacgaggacca 229177  T
Q  102 aaa 104  Q
    |||    
T  229176 aaa 229174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 35193422 - 35193322
Alignment:
Q  3 taggactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgacca 101  Q
    |||||||||||||||||||| ||| ||| |||||| | ||||||||||||||||||||| | || || |||||  ||||||| |||||||| || |||||    
T  35193422 taggactaaaactgcaaaaaacat-atagtttagggacgattttgttcgatttgaaagaggtaggaccattttcgtgagctgatcaaaatgcgaggacca 35193324  T
Q  102 aa 103  Q
    ||    
T  35193323 aa 35193322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 24335877 - 24335786
Alignment:
Q  2 gtaggactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatg 92  Q
    |||||||||||||| |||||| ||||||| || || || | ||||||||||||||||||| |||  || |||||  ||||||||||||||||    
T  24335877 gtaggactaaaactccaaaaaacatgatagttcagatacggttttgttcgatttgaaagaggcatgaccattttcgtgagctggtcaaaatg 24335786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 17504090 - 17503989
Alignment:
Q  1 ggtaggactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgac 99  Q
    |||||||||||||||||||||| ||||||| |||||| | | || ||||| |||||||||| |||| || |||||  |||| ||||||||||| || |||    
T  17504090 ggtaggactaaaactgcaaaaaacatgatagtttagg-acggttatgttccatttgaaagaggcaggaccattttcgtgagatggtcaaaatgcgaggac 17503992  T
Q  100 caa 102  Q
    |||    
T  17503991 caa 17503989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 33689939 - 33689854
Alignment:
Q  6 gactaaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatg 92  Q
    |||||||||||||||||||| ||| |||| | | ||||||||||||||| ||||| | || || | |||| |||| |||||||||||    
T  33689939 gactaaaactgcaaaaacat-atagtttaaggacgattttgttcgatttaaaagaggtaggaccaattttgtgagttggtcaaaatg 33689854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 51309952 - 51310038
Alignment:
Q  18 aaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgaccaaaa 104  Q
    |||||||||||| |||||| |   ||||||||||||||||||| |||  || |||||  ||||||||| |||||| || ||||||||    
T  51309952 aaaaacatgatagtttagggactgttttgttcgatttgaaagaggcatgaccattttcgtgagctggtaaaaatgcgaggaccaaaa 51310038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 40160520 - 40160624
Alignment:
Q  1 ggtaggactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgac 99  Q
    |||| ||||||||||||||||| ||||||| |||||| | | |||||||| |||||||||| |||  || |||||  |||| |||||||||||  | |||    
T  40160520 ggtaagactaaaactgcaaaaaacatgatagtttagg-acggttttgttcaatttgaaagaggcatgactattttcgtgagttggtcaaaatgcaaggac 40160618  T
Q  100 caaaaa 105  Q
    ||||||    
T  40160619 caaaaa 40160624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 11523802 - 11523721
Alignment:
Q  1 ggtaggactaaaactgcaaaaa--catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgag 80  Q
    ||||||||||||||||||||||  ||||||| |||||| | | ||||||| ||||||||||||||| ||| |||||||||||    
T  11523802 ggtaggactaaaactgcaaaaaaacatgatagtttagggacggttttgtttgatttgaaagaagcataaccatttttatgag 11523721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 35163300 - 35163209
Alignment:
Q  1 ggtaggactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatg 92  Q
    |||||||||||||||||||||| ||||||| |||||| | | |||||||||||||||||||  ||  || |||||| ||||||||||||||||    
T  35163300 ggtaggactaaaactgcaaaaaacatgatagtttagg-acggttttgttcgatttgaaagagacaagaccatttttgtgagctggtcaaaatg 35163209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 35163615 - 35163708
Alignment:
Q  1 ggtaggactaaaactgcaaaaa---catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatg 92  Q
    ||||||||||||||||||||||   ||| ||| |||||| | ||||||||| ||||||||||| ||||||| |||||  ||||||||||||||||    
T  35163615 ggtaggactaaaactgcaaaaaaaacat-atagtttagggacgattttgtttgatttgaaagaggcagaaccattttcgtgagctggtcaaaatg 35163708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 835510 - 835407
Alignment:
Q  1 ggtaggactaaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgacc 100  Q
    |||||||||||| ||||||||| |||||| |||||| |   ||||||||||||||||||| |||  || |||||  ||||||| | ||||||||| ||||    
T  835510 ggtaggactaaagctgcaaaaaaatgatagtttagggacagttttgttcgatttgaaagaggcaagaccattttcgtgagctgctaaaaatgtgaggacc 835411  T
Q  101 aaaa 104  Q
    ||||    
T  835410 aaaa 835407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 33095831 - 33095771
Alignment:
Q  1 ggtaggactaaaactgcaaaaa-catgataatttaggtatgattttgttcgatttgaaaga 60  Q
    |||||||||||||||||||||| ||||||| |||||| | | |||||||||||||||||||    
T  33095831 ggtaggactaaaactgcaaaaaacatgatagtttagggacggttttgttcgatttgaaaga 33095771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 28636402 - 28636347
Alignment:
Q  6 gactaaaactgcaaaaacatgataatttaggtatgattttgttcgatttgaaagaag 62  Q
    |||||||||||||||||||| ||| |||||| | ||||||||||||||| |||||||    
T  28636402 gactaaaactgcaaaaacat-atagtttaggaacgattttgttcgatttaaaagaag 28636347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 32836103 - 32836032
Alignment:
Q  20 aaacatgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatg 92  Q
    |||||||||| |||||| | | ||||||||||||||||||| |||| ||  ||||| ||||||||||||||||    
T  32836103 aaacatgatagtttagg-acggttttgttcgatttgaaagaggcaggaccgtttttgtgagctggtcaaaatg 32836032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 46378 - 46279
Alignment:
Q  6 gactaaaactgcaaaaa--catgataatttaggtatgattttgttcgatttgaaagaagcagaacaatttttatgagctggtcaaaatgtgatgaccaaa 103  Q
    |||||||||||||||||  ||| ||| |||||| ||||||||||||||||| ||||| | ||||| |||||  | || ||||||||||| || |||||||    
T  46378 gactaaaactgcaaaaaaacat-atagtttagggatgattttgttcgatttaaaagaggtagaaccattttcgtaagttggtcaaaatgcgaggaccaaa 46280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 6825 - 6885
Alignment:
Q  1 ggtaggactaaaactgc--aaaaacatgataatttaggtatgattttgttcgatttgaaaga 60  Q
    |||||||||||||||||  ||||||||| || |||||||| ||||||||||||||| |||||    
T  6825 ggtaggactaaaactgcaaaaaaacatg-tagtttaggtacgattttgttcgatttaaaaga 6885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 6843 - 6903
Alignment:
Q  1 ggtaggactaaaactgc--aaaaacatgataatttaggtatgattttgttcgatttgaaaga 60  Q
    |||||||||||||||||  ||||||||| || |||||||| ||||||||||||||| |||||    
T  6843 ggtaggactaaaactgcaaaaaaacatg-tagtttaggtacgattttgttcgatttaaaaga 6903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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