View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15454_low_10 (Length: 501)
Name: NF15454_low_10
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15454_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 28718482 - 28718066
Alignment:
| Q |
1 |
aatgaccagttgagaaattaaaagcaccattccttcaaaaaataatgtaaagcaccataaatgttacagtacttctaagtaaaattgcatagcttggtac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28718482 |
aatgaccagttgagaaattaaaagcaccattccttcaaaaaataatgtaaagcaccataaatgttac-----ttctaagtaaaattgcatagcttggtac |
28718388 |
T |
|
| Q |
101 |
acgaaaacgacggat--------tgtcctttagagtttagattaagaatctttttgaatgattcaggtttaacattggcttacaaccactagtgctactg |
192 |
Q |
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||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28718387 |
acgaaaacgacggatcagaggtttgtcctttagagtttaaattaagaatctttttcaatgattcaggtttaacattggcttacaaccactagtgctactg |
28718288 |
T |
|
| Q |
193 |
catgtgcataaaattaaaagtaccactgcgcatgaaccatatgaaaaaagagataatcattttttatatatcattgatgacaagtaccactgcgcttgaa |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28718287 |
catgtgcataaaattaaaagtaccactgcgcatgaaccatatgaaaaaagagaaaatcattttttatatatcattgatgacaagtaccactgcgcttgaa |
28718188 |
T |
|
| Q |
293 |
ctcgtaaataccgtagatgactcttaaatattgttttcattttcgatgcataagttgtttacggtatttacgatcgacaagatcattca-tatttgtgaa |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28718187 |
ctcgtaaataccgtagatgactcttaaatattgttttcattttcgatgcataagttgtttacggtatttacgatcgacaagatcattcattatttgtgaa |
28718088 |
T |
|
| Q |
392 |
gatttgcttttgtcacctattt |
413 |
Q |
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| T |
28718087 |
gatttgcttttgtcacccattt |
28718066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 28709787 - 28709513
Alignment:
| Q |
1 |
aatgaccagttgagaaattaaaagcaccattccttcaaaaaataatgtaaagcaccataaatgttacagtacttctaagtaaaattgcatagcttggtac |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
28709787 |
aatgaccagttgagaaattaaaagcaccattccttcaaaaaataatgtaaagcaccataaatgttac-----ttccaagtaaaattgcatagcttggtac |
28709693 |
T |
|
| Q |
101 |
acgaaaacgacggat--------tgtcctttagagtttagattaagaatctttttgaatgattcaggtttaacattggcttacaaccactagtgctactg |
192 |
Q |
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||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28709692 |
acgaaaacgacggatcagaggtttgtcctttagagtttaaattaagaatctttttcaatgattcaggtttaacattggcttacaaccactagtgctactg |
28709593 |
T |
|
| Q |
193 |
catgtgcataaaattaaaagtaccactgcgcatgaaccatatgaaaaaagagataatcattttttatatatcattgatga |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||| |||||||| |
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| T |
28709592 |
catgtgcataaaattaaaagtaccactgcgcatgaaccacatgaaaaaagagaataccattttttatatataattgatga |
28709513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 414 - 476
Target Start/End: Complemental strand, 28718006 - 28717944
Alignment:
| Q |
414 |
attggttgaccgtcttttttatacttcttcggtatactttgttgtttttgttcccatgtacta |
476 |
Q |
| |
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||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
28718006 |
attggttgattgtattttttatacttcttcgctatactttgttgtttttgttcccatgtacta |
28717944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 209
Target Start/End: Complemental strand, 28702339 - 28702268
Alignment:
| Q |
138 |
gaatctttttgaatgattcaggtttaacattggcttacaaccactagtgctactgcatgtgcataaaattaa |
209 |
Q |
| |
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|||| ||||| |||||||| |||||||||||||| |||||||| || |||| | ||||| |||||| ||||| |
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| T |
28702339 |
gaatttttttcaatgattctggtttaacattggcctacaaccaataatgctccagcatgcgcataacattaa |
28702268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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