View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15454_low_11 (Length: 489)
Name: NF15454_low_11
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15454_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 297 - 467
Target Start/End: Original strand, 11053281 - 11053451
Alignment:
| Q |
297 |
gtcattgtgattaatttatttgagtcaccttagtccttaggaatgttcttggtcgttacattcactcattctattctcattctaattcctcacactcact |
396 |
Q |
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| T |
11053281 |
gtcattgtgattaatttatttgaatcaccttagtccttaggaatgttcttggtcgttacattcactcattctattctcattctaattcctcacactcact |
11053380 |
T |
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| Q |
397 |
atataaacgcacgtcctcttccattcttcatcatcacatttctcaccattttcaacaaccaacacacaaat |
467 |
Q |
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| T |
11053381 |
atataaacgcacgtcctcttccattcttcatcatcacatttctcaccattttcaacaaccaacacacaaat |
11053451 |
T |
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Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 11052995 - 11053146
Alignment:
| Q |
1 |
ttcaatatattactcatttaaatccggtcgaagaatatactagtcacttaaattccataaattgtatatgannnnnnnngacacattaatgtatatgann |
100 |
Q |
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| T |
11052995 |
ttcaatatattactcatttaaatccggtcaaagaaaatactagccacttaaatgccataaattgtatatgattttttttgacacattaatgtatatgatt |
11053094 |
T |
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| Q |
101 |
nnnnnnncctagaacaatgtatatgatttttgttcccatgcaatgaattgac |
152 |
Q |
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| T |
11053095 |
ttttttttctagaacaatgtatatgatttttgttaccatgcaatgaattgac |
11053146 |
T |
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