View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15454_low_13 (Length: 477)
Name: NF15454_low_13
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15454_low_13 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 8 - 477
Target Start/End: Original strand, 29662099 - 29662568
Alignment:
| Q |
8 |
aaatgaagcgtcctcaaaacaaattatggatggtgggcatgaaaaccaacatttgtttgcggtactgttctgtgattttagaatgttggcatcatcacct |
107 |
Q |
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| T |
29662099 |
aaatgaagcgtcctcaaaacaaattatggatggtgggcatgaaaaccaacatttgtttgcggcactgttctgtgattttagaatgttggcatcatcacct |
29662198 |
T |
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| Q |
108 |
tcaaggttttattactcactattgtgctgtcacacagtcataacttgctttaggtgcaaatatgttaacttaattggccaattcaatcgatgaaccaaga |
207 |
Q |
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| T |
29662199 |
tcaaggttttattactcactattgtgctgtcacacagtcataacttgctttaggtgcaaatatgttaacttaattggccaattcaatcgatgatccaaga |
29662298 |
T |
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| Q |
208 |
atgtagacattgtccatctaaatcctaagtaatcaattcattttatagttatgcgaattaatcctatatcgataatagctaatgctcaatatgnnnnnnn |
307 |
Q |
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| T |
29662299 |
atgtagacattgtccatctaaatcctaagtaatcaattcattttatagttatgcgaattaatcctatatcgataatagctaatgctcaatatgttttttt |
29662398 |
T |
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| Q |
308 |
aaaaattgaaatgcgcatcgggtaattcctgcattcgtaactccatgatttcccagtaaaatattgactgtggtgacattagttttcctacaatcaaaat |
407 |
Q |
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| T |
29662399 |
aaaaattgaaatgcgcattgggtaattcctgcattcgtaactccatgatttcccagtaaaatattgactgtggtgacattagttttcctacaatcaaaat |
29662498 |
T |
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| Q |
408 |
caatattgctctttgtgtgtttacttattagcatctactgtatactttgtatttcaagaatctatgttgc |
477 |
Q |
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| T |
29662499 |
caatattgctctttgtgtgtttacttattagcatctactgtatactttgtatttcaagaatctatgttgc |
29662568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 86 - 288
Target Start/End: Complemental strand, 33183633 - 33183432
Alignment:
| Q |
86 |
tagaatgttggcatcatcaccttcaaggtttta-ttactcactattgtgctgtcacacagtcataacttgctttaggtgcaaatatgtta----acttaa |
180 |
Q |
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| T |
33183633 |
tagaatgttggcatcatcaccttcaatgttttagttactcactattgtactg---cacagtcatagcatgctttaggtgcaaagatgttagttaactta- |
33183538 |
T |
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| Q |
181 |
ttggccaattcaatcgatgaaccaagaatgtagacattgtccatctaaatcctaagtaatcaattcattttatagttatgcgaattaatcctatatcgat |
280 |
Q |
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| T |
33183537 |
ttcgtcaattcgattgttggcccaagaatatagatgttgtccatctaaatcctaagtagtcaattcgttcta--gttatgcgaattaatcctatatcgat |
33183440 |
T |
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| Q |
281 |
aatagcta |
288 |
Q |
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| T |
33183439 |
aatagcta |
33183432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 33183989 - 33183914
Alignment:
| Q |
8 |
aaatgaagcgtcctcaaaacaaattatggatggtgggcatgaaaaccaacatttgtttgcggtactgttctgtgat |
83 |
Q |
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||||||||||||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33183989 |
aaatgaagcgtcctcaacaaagttaatggatggtgggcatgaaaaccaacatttgtttgcggtactgttctatgat |
33183914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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