View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15454_low_14 (Length: 431)
Name: NF15454_low_14
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15454_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 162 - 420
Target Start/End: Original strand, 41896534 - 41896792
Alignment:
| Q |
162 |
agaagagtgttactgactccattgcagaagaccaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaac |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41896534 |
agaagagtgttactgactccattgcagaagaccaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaac |
41896633 |
T |
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| Q |
262 |
tgtaacacaattcataaaataatcaataatagtaaatatgcattcaaatattttatgaagaatatgataaaaattgctaaatttatttatgagaaccgta |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41896634 |
tgtaacacaattcataaaataatcaataatagtaaatatgcattcaaatactttatgaagaatatgataaaaattgctaaatttatttatgagaaacgta |
41896733 |
T |
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| Q |
362 |
ttacggagaaagtaacgatatttgtaatcagcggtccgagactttggaattgctttctt |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41896734 |
ttacggagaaagtaacgatatttgtaatcagcggtccgagactttggaattgctttctt |
41896792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 41896392 - 41896497
Alignment:
| Q |
20 |
gtacccaaacaaatagtagcttgtttttcgaatcgccaatagcacatgctaaagcaccatcaacattatgtctgcatttagtgtaacagaagggatacag |
119 |
Q |
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| T |
41896392 |
gtacccaaacaaatagtagcttgtttttcgaatcgccaatagcacatgctaaagcaccatcaacattatgtctgcatttagtgtaacaaaagggatacag |
41896491 |
T |
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| Q |
120 |
tgtaag |
125 |
Q |
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|||||| |
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| T |
41896492 |
tgtaag |
41896497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 41829151 - 41829059
Alignment:
| Q |
171 |
ttactgactccattgcagaagaccaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactg |
263 |
Q |
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||||||||| | ||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41829151 |
ttactgacttctttgcagaagtccaaatcccaacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgaaaactg |
41829059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 171 - 263
Target Start/End: Original strand, 41885561 - 41885653
Alignment:
| Q |
171 |
ttactgactccattgcagaagaccaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactg |
263 |
Q |
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||||||||| | ||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41885561 |
ttactgacttctttgcagaagtccaaatcccaacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgaaaactg |
41885653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 162 - 309
Target Start/End: Original strand, 41891796 - 41891943
Alignment:
| Q |
162 |
agaagagtgttactgactccattgcagaagaccaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaac |
261 |
Q |
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|
|||||||||||||| |||| | ||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| | |
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| T |
41891796 |
agaagagtgttactaactcggatctagaagaccagaggcccacttcaaatctttctaagcagaatttcataaattcttcagtaaatggtctcttgtaacc |
41891895 |
T |
|
| Q |
262 |
tgtaacacaattcataaaataatcaataatagtaaatatgcattcaaa |
309 |
Q |
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| ||||||| |||| |||||||| | ||| ||| |||||||||||| |
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| T |
41891896 |
tttaacacagttcagaaaataataatcaatgataagtatgcattcaaa |
41891943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 41901575 - 41901660
Alignment:
| Q |
170 |
gttactgactccattgcagaagaccaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctctt |
255 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |
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| T |
41901575 |
gttactgactccattgcagaagaccagagtcccacttcaaatctttccaagcagaatttaataaattcttcgctaaatggcctctt |
41901660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 34453822 - 34453742
Alignment:
| Q |
183 |
ttgcagaagaccaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactg |
263 |
Q |
| |
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||||| ||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34453822 |
ttgcacaagtccaaatcccaacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgaaaactg |
34453742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 349 - 426
Target Start/End: Original strand, 41893545 - 41893622
Alignment:
| Q |
349 |
tatgagaaccgtattacggagaaagtaacgatatttgtaatcagcggtccgagactttggaattgctttcttctcact |
426 |
Q |
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|||||||| ||||||||||||||||||||||||| || |||||| || ||||||||||||||||||||||| ||||| |
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| T |
41893545 |
tatgagaaatgtattacggagaaagtaacgatattcgtgatcagcagttcgagactttggaattgctttcttatcact |
41893622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 360 - 425
Target Start/End: Original strand, 41901773 - 41901838
Alignment:
| Q |
360 |
tattacggagaaagtaacgatatttgtaatcagcggtccgagactttggaattgctttcttctcac |
425 |
Q |
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||||||| ||||||||| |||||||||||||||| || ||||||||||||||||||||||| |||| |
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| T |
41901773 |
tattacgtagaaagtaaggatatttgtaatcagcagttcgagactttggaattgctttcttatcac |
41901838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 41891586 - 41891644
Alignment:
| Q |
24 |
ccaaacaaatagtagcttgtttttcgaatcgccaatagcacatgctaaagcaccatcaa |
82 |
Q |
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|||||||||||| ||||||||||||||||| || ||| ||||| ||||||||||||||| |
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| T |
41891586 |
ccaaacaaatagcagcttgtttttcgaatctcccataacacattctaaagcaccatcaa |
41891644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 41901409 - 41901476
Alignment:
| Q |
22 |
acccaaacaaatagtagcttgtttttcgaatcgccaatagcacatgctaaagcaccatcaacattatg |
89 |
Q |
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||||||||||||||||||||||||||| | || || || ||||| ||||||||| |||||| |||||| |
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| T |
41901409 |
acccaaacaaatagtagcttgtttttcaattctccgatggcacaggctaaagcatcatcaatattatg |
41901476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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