View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15454_low_17 (Length: 422)
Name: NF15454_low_17
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15454_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 411
Target Start/End: Original strand, 16584929 - 16585324
Alignment:
| Q |
17 |
caaatgtggtaccaaaatgaagctattgacgaatcccacctacccacacatgatctatcagatttcaaagagacattactcctctttttacctcttaaag |
116 |
Q |
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| T |
16584929 |
caaatgtggtaccaaaatgaagctattgacgaattccacctacccacacatgatctatcagatttcaaagagacattactcctctttttacctcttaaag |
16585028 |
T |
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| Q |
117 |
tcacaattttagaactctattaaagggtgta-acttttgctggctttgttgcgtaaagcgcttttataaagtgttgttgatcgttgttgtaagaattatt |
215 |
Q |
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| T |
16585029 |
tcacaattttagaaccctattaaagggtgtatacttttgctggctttgttgcgtgaagcgcttttttaaagtgttgttgatcgttgttgtaagaattatt |
16585128 |
T |
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| Q |
216 |
atgcaaaaatattcatgtttagatcatttcataaaatttagtgatttttaaaatgtttcaaaatgttgttttcatttgagatatataaacggctagatcc |
315 |
Q |
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| T |
16585129 |
atgcaaaaatattcatgtttagatcatttcataaaatttagtgatttttaaaatgtttcaaaatgttgttttcatttgagatatataaacggctagatcc |
16585228 |
T |
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| Q |
316 |
atgattttgtaggtttagttctnnnnnnntattgatttttgataaatacgaaataaaaagggaaaatgtaatattttcttgttgtttcatgttcat |
411 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
16585229 |
atgattttgtaggtttagttctaaaaaaatattgatttttgatagatacgaaataaaaagggaaaatgttatattttcttgttgtttcatgttcat |
16585324 |
T |
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