View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15454_low_19 (Length: 404)
Name: NF15454_low_19
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15454_low_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 11816131 - 11815814
Alignment:
| Q |
1 |
atggaaagtgttaacttggtcaagagctattcatat--ggatcctacaaattatctcaacccggagaaatttaatccatcgagatggaatgtgagttgta |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11816131 |
atggaaagtgttaacttggtcaagagctattcatatatggatcctacaaattatcccaacccggagaaatttaatccatcgagatggaatgtgagttgta |
11816032 |
T |
|
| Q |
99 |
ttgaattgtattgtataatctaaaaccctatttttggaagatacaaacaaaagtacttgt--atattagtgttttattttcatatgtgcagaatcacaat |
196 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11816031 |
ttg-----tattgtataatctaaaaccctatttttggaagatacaaacaaaagtacttgtgtatattagtgtttt-ttttcatatgtgcagaatcacaat |
11815938 |
T |
|
| Q |
197 |
gctaaagttggaacattccttccttttggagcaggaagtaggcactgtcctggaagtgacttggctaaaattgaaatatccatatttctacattatttcc |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11815937 |
gctaaagttggaacattccttccttttggagcaggaagtaggcactgtcctgggagtgacttggctaaaattgaaatatccatttttctacattatttcc |
11815838 |
T |
|
| Q |
297 |
ttaataattacaagtgagctctcg |
320 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
11815837 |
ttaataattacaagtgagctctcg |
11815814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 180 - 298
Target Start/End: Complemental strand, 11800101 - 11799983
Alignment:
| Q |
180 |
atgtgcagaatcacaatgctaaagttggaacattccttccttttggagcaggaagtaggcactgtcctggaagtgacttggctaaaattgaaatatccat |
279 |
Q |
| |
|
|||| ||| ||||||| || ||||||||||| || ||||||||||||||||||||| ||| ||||||| ||||||||||| ||| |||||| | | |
|
|
| T |
11800101 |
atgttcaggatcacaaagcaaaagttggaacctttattccttttggagcaggaagtatgcattgtcctgcgagtgacttggcaaaacctgaaatttttgt |
11800002 |
T |
|
| Q |
280 |
atttctacattatttcctt |
298 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
11800001 |
atttctacattatttcctt |
11799983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 11800274 - 11800175
Alignment:
| Q |
1 |
atggaaagtgttaacttggtcaagagctattcatatggatcctacaaattatctcaacccggagaaatttaatccatcgagatggaatgtgagttgtatt |
100 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||| || |||||| ||||| ||||| || |||||||||||||||||||| ||||||||| |||| |
|
|
| T |
11800274 |
atggaaagtgctaacatggtcaagagctattcatcatgaacctacatattattcaaacccagatgaatttaatccatcgagatgggatgtgagttctatt |
11800175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 11826278 - 11826175
Alignment:
| Q |
1 |
atggaaagtgttaacttggtcaagagctat----tcatatggatcctacaaattatctcaacccggagaaatttaatccatcgagatggaatgtgagttg |
96 |
Q |
| |
|
||||||||||||| |||||| ||||||||| ||| |||||||||||| |||||| ||| |||| ||||||| ||||| ||||||||||| ||||| |
|
|
| T |
11826278 |
atggaaagtgttaccttggttaagagctatatattcacatggatcctacatattatccaaactcggatgaatttaacccatcaagatggaatgtaagttg |
11826179 |
T |
|
| Q |
97 |
tatt |
100 |
Q |
| |
|
|||| |
|
|
| T |
11826178 |
tatt |
11826175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 206 - 297
Target Start/End: Original strand, 37436034 - 37436125
Alignment:
| Q |
206 |
ggaacattccttccttttggagcaggaagtaggcactgtcctggaagtgacttggctaaaattgaaatatccatatttctacattatttcct |
297 |
Q |
| |
|
||||| || ||||||||||||||||||||||||| |||||||||| ||||| || ||| ||||||| || |||||||| ||||||||||| |
|
|
| T |
37436034 |
ggaacctttcttccttttggagcaggaagtaggctctgtcctggagccgacttagcaaaacttgaaatttctatatttcttcattatttcct |
37436125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University