View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15454_low_2 (Length: 958)
Name: NF15454_low_2
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15454_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 512 - 940
Target Start/End: Complemental strand, 35018833 - 35018406
Alignment:
| Q |
512 |
cattatataataaaattttccattagaacttttgttagtaatagtataccattattactgagacatattaaagctaatgatgttgacttttggaagggtt |
611 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35018833 |
cattaaataataaaattttccatgagaacttttgttagtaatagtataccattattactgagacatattaaagctaatgatgttgacttttggaagggtt |
35018734 |
T |
|
| Q |
612 |
gtcatgttttttgaacctctcacggatcttgttttcctatgtttattatgtgcgctgcccgtggtccaacttattgataacaatataccagtggactgat |
711 |
Q |
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| T |
35018733 |
gtcatgttttttgaacctctcacggatcttgttttcctatgtttattatgtgcgttgcccgtggtcctacctattgataacaatataccggtggactgat |
35018634 |
T |
|
| Q |
712 |
tgctcctgcaaaatctagtgattactcatcacgtttcaccatctcatttgagtggtaattaattatcttattggtaaatctagtgatcaatgttgacaac |
811 |
Q |
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| T |
35018633 |
tgctcctgcaaaatctagtgattactcatcacgtttcaccatctcatttgagtggta---aattatcttattggtaaatctagtgatcaatgttgacaac |
35018537 |
T |
|
| Q |
812 |
tatgaagtattttaattaaccaacagagcaacataaacttgaatagaactttttattatatgaacacgaccccttaatgtacattaacaac--tatgaag |
909 |
Q |
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| T |
35018536 |
tatgaagtattttaattaaccaacagagcaacataaacttgaatagaactttttattatatgaacacgaccccttaatgtacattaacaactatatgaag |
35018437 |
T |
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| Q |
910 |
tactagattttacttttgaaataattaatcc |
940 |
Q |
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| T |
35018436 |
tactagattttacttttgaaataattaatcc |
35018406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 57 - 419
Target Start/End: Complemental strand, 35019234 - 35018872
Alignment:
| Q |
57 |
attaattagcacctattcatcattgtattagttgcctaaggttatccacatttcttaaaaaataaagttggctaaatggtcaaatccttataa------- |
149 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35019234 |
attaattagcacctattcatcattgtattagttgcctaaggttatccacatttcttaaaaaataaagttggctaaatggtcaaatccttataaattataa |
35019135 |
T |
|
| Q |
150 |
tgctaacttaaaggcaaaatgtgaacaagttatggatttatgatgtttatatattcacgttgcatgtcaagctatatgaactcaatttgtattacttaaa |
249 |
Q |
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| T |
35019134 |
tgctaacctaaaggcaaaatgtgaacaagttatggatttatgatgttcatatattcacgttgcatgtcaagctatatgaactca-tttgtattacttaaa |
35019036 |
T |
|
| Q |
250 |
tataaagtagctttcagaaagaaagnnnnnnngacatcatacatctttgtatttatttattctattcatttttgtcatacgatattttttagcataagtg |
349 |
Q |
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| T |
35019035 |
tataaagtagctttcaggaaaaaa-------agacatcatacatctttgtatttatttattctattcatttttgtcatacgatattttttagcataagtg |
35018943 |
T |
|
| Q |
350 |
gaatgatatttgatgttactcttgcttcatgtttcaatcaagaacgaacacaggtcgctg-ttggtcttaa |
419 |
Q |
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| T |
35018942 |
gaatgatatttgatgttactcttgcttcatgtttcaatcaagaacgaacacaagtcgttgtttggtcttaa |
35018872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 329 - 410
Target Start/End: Complemental strand, 35041183 - 35041100
Alignment:
| Q |
329 |
cgatattttttagcataagtggaatgatat-ttgatgtt-actcttgcttcatgtttcaatcaagaacgaacacaggtcgctgt |
410 |
Q |
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| T |
35041183 |
cgataatttttagcataggtggaatgatgtattgatgttcactcttgcttcttgtttcaatcaagaacgaacacaagtcgctgt |
35041100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 485 - 519
Target Start/End: Complemental strand, 35018874 - 35018840
Alignment:
| Q |
485 |
taaaatatgaatgaatatacttcatcacattatat |
519 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
35018874 |
taaaatatgaatgaatatacttcatcacattatat |
35018840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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