View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15454_low_22 (Length: 394)
Name: NF15454_low_22
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15454_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 12 - 376
Target Start/End: Original strand, 2905834 - 2906198
Alignment:
| Q |
12 |
acagactctatctgaaaaaacaagctaatatggcagaagttttgggcaatgattctgataaatcctattcaagaatgggttatatcagtggagttggtgc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2905834 |
acagactctatctgaaaaaacaagctaatatggcagaagttttgggtaatgattctgataaatcctattcaagaatgggttatatcagtggagttggtgc |
2905933 |
T |
|
| Q |
112 |
acatgtgcagccattgaatgaccctagacagtttcataataataacagtgctttcagatcctttccatctagtggtatgggtactagattgaacactcct |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2905934 |
tcatgtgcagccattgaatgaccctagacagtttcataataataacagtgctttcagatcctttccatctagtggtatgagtactagattgaacactcct |
2906033 |
T |
|
| Q |
212 |
gctagtagtgtcaatatgcatggatttcctgcacataatttgaacaactcaacaggggatcatcttaggtttcaatcggctatagctcgttccaatctga |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2906034 |
tctagtagtgtcaatatgcatggatttcctgcacataatttgaacaactcaacaggggatcatcttaggtttcaatcggccatagctcgttccaatctga |
2906133 |
T |
|
| Q |
312 |
atgatgttcaaagaatgccattttcttctgtagactctcaacattcacagttttctcatccttta |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2906134 |
atgatgttcaaagaatgccattttcttctgtagactctcaacattcacagttttctcatccttta |
2906198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 217 - 367
Target Start/End: Complemental strand, 48869155 - 48869006
Alignment:
| Q |
217 |
tagtgtcaatatgcatggatttcctgcacataatttgaacaactcaacaggggatcatcttaggtttcaatcggctatagctcgttccaatctgaatgat |
316 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||| ||| |||| || | |||| |||| ||||||| |||| | ||||| | |||||| ||| || |
|
|
| T |
48869155 |
tagtgtcaatatgcatggatttcctactcataatttaaaccactccgcaaag-atcaccttaagtttcaaccggccaaagctcatgccaatccgaaccat |
48869057 |
T |
|
| Q |
317 |
gttcaaagaatgccattttcttctgtagactctcaacattcacagttttct |
367 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||| ||| ||| ||||||| |
|
|
| T |
48869056 |
gttcaaagaatgccaatttcttctgtagcctctcagcatccactgttttct |
48869006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 48869213 - 48869159
Alignment:
| Q |
123 |
cattgaatgaccctagacagtttcataataataacagtgctttcagatcctttcc |
177 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
48869213 |
cattgaataaccctagacagtttcataatcataacagtgctttcagaccctttcc |
48869159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University