View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15454_low_29 (Length: 293)
Name: NF15454_low_29
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15454_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 39812150 - 39811883
Alignment:
| Q |
19 |
gctatatcattacgactgcagaagaagtgtgttttgtacatatattctacatacctttgttttagcagcaaatctatatatctcaggtacatcagattgt |
118 |
Q |
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| T |
39812150 |
gctatatcattacgactgcagaagaagtgtgttttgtacatatattctacatacctttgttttagcagcaaatctatatatctcaggtacatcagattgt |
39812051 |
T |
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| Q |
119 |
ctatgatgtttagggtatgcgacatgtccatataggtcatatttgtcaatcagtttcaacacagttgtgagaacattgccactcccagaagacatatctt |
218 |
Q |
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| T |
39812050 |
ctatgatgtttagggtatgcgacatgtccatataggtcatacttgtcaatcagtttcaacacagttgtgagaacattgccactcccagaagacatatctt |
39811951 |
T |
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| Q |
219 |
ctatgtcatctctgtttcccattataagggtctgtttagaaacatattagtcatttcacaattgctca |
286 |
Q |
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| T |
39811950 |
ctatgtcatctctgtttcccattataagggtctgtttagaaacatatttgtcatttcacaattgctca |
39811883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 243
Target Start/End: Complemental strand, 15799460 - 15799339
Alignment:
| Q |
122 |
tgatgtttagggtatgcgacatgtccatataggtcatatttgtcaatcagtttcaacacagttgtgagaacattgccactcccagaagacatatcttcta |
221 |
Q |
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| T |
15799460 |
tgatgtttagggtatgcaacttgtccatagaggtcatacttatcaatcaacttcaacactgttacaagaacactagcatttcccgaagacatctcatcta |
15799361 |
T |
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| Q |
222 |
tgtcatctctgtttcccattat |
243 |
Q |
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| T |
15799360 |
cgtcatccctatttcccattat |
15799339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 170
Target Start/End: Original strand, 47756669 - 47756745
Alignment:
| Q |
94 |
atatatctcaggtacatcagattgtctatgatgtttagggtatgcgacatgtccatataggtcatatttgtcaatca |
170 |
Q |
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| T |
47756669 |
atatatttcaggaacatcagattgtttgtggtgtttaggatatgccacttgcccatacaggtcatacttatcaatca |
47756745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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