View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15454_low_31 (Length: 259)
Name: NF15454_low_31
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15454_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 58 - 245
Target Start/End: Original strand, 2905614 - 2905801
Alignment:
| Q |
58 |
aattaagagaaagtcttagatggtcacgaccatttcggcataaaatctgggcacgctcacatatttcaaaaaaggtagagagaaaaaataattaaatgtt |
157 |
Q |
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| T |
2905614 |
aattaagagaaagtcttagatggtcacgaccatttcggcataaaatctgggcacactcacatatttcaaaaaaggtagagagaaaaaataattaaatgtt |
2905713 |
T |
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| Q |
158 |
tatcttgatgataattaaatgatatgtatttttgatgcgtgtgcgccaaaatgatgtacccaatcattgtgagcatataagtattttc |
245 |
Q |
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| T |
2905714 |
tatcttgatgataattaaatgatatgtatttttgatgcgtgtgcgccaaaatgatgtaccaaatcattgtgaacatataagtattttc |
2905801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 2905548 - 2905594
Alignment:
| Q |
15 |
gacacatatgtcaaacatgacactaaacatcgacaatactaataatt |
61 |
Q |
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| T |
2905548 |
gacacatatgtcaaacatgacactaaacatcgacaatacttataatt |
2905594 |
T |
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