View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15454_low_32 (Length: 250)
Name: NF15454_low_32
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15454_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 78 - 216
Target Start/End: Original strand, 31814407 - 31814545
Alignment:
| Q |
78 |
caaatttttcttgttcttattttattcctataaattcattttcgcatttacatgctaatattatactcaacaattgtttaattatttgctaaagttaagt |
177 |
Q |
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| T |
31814407 |
caaatttttcttgttcttattttattcctataaattcattttcgcatttacatgctaatattatactcaacaattgtttaattagttgctaaagataagt |
31814506 |
T |
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| Q |
178 |
gtcactaatgcacttgatttctcattacatgctaatatt |
216 |
Q |
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| T |
31814507 |
gtcactaatgcacttgatttatcattacatgctaatatt |
31814545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 24280007 - 24279945
Alignment:
| Q |
51 |
catgtctggcaattttttccttcataacaaatttttcttgttcttattttattcctataaatt |
113 |
Q |
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| T |
24280007 |
catgtctggcaattttttccttcataacaaatttttcttgttcttattttattcctataaatt |
24279945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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