View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15454_low_36 (Length: 228)
Name: NF15454_low_36
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15454_low_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 2017034 - 2016885
Alignment:
| Q |
18 |
ataaaaacgttaaccagaggaaaatttgagtaacaaatgaagaagaaaacaaataagaaaggataaaaaatcttaccaaggaatgaaaagggagttgtac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2017034 |
ataaaaacgttaaccagaggaaaatttgagtaacaaatgaagaagaaaacaaataagaaaggatacaaaatcttaccaaggaatgaaaagggagttgtac |
2016935 |
T |
|
| Q |
118 |
ctgttgacagaaacgtgagagtaagagatttgtagtaatgtttcttttca |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2016934 |
ctgttgacagaaacgtgagagtaagagatttgtagtaatgttttttttca |
2016885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University