View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15454_low_37 (Length: 223)

Name: NF15454_low_37
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15454_low_37
NF15454_low_37
[»] chr8 (3 HSPs)
chr8 (1-208)||(44460636-44460843)
chr8 (1-208)||(44468169-44468376)
chr8 (1-208)||(34501841-34502045)
[»] chr1 (2 HSPs)
chr1 (1-101)||(46359506-46359606)
chr1 (169-208)||(46359603-46359642)
[»] chr5 (2 HSPs)
chr5 (96-159)||(40180103-40180166)
chr5 (97-152)||(38604618-38604673)


Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 44460636 - 44460843
Alignment:
Q  1 gtacatttggctttcaagatgttgaatgatatccctgaggaggtggacgaccgggaaaaattgtttaaattcatgctctttacacatgttttcggagcct 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44460636 gtacatttggctttcaagatgttgaatgatatccccgaggaggtggacgaccgggaaaaattgtttaaactcatgctctttacacatgttttcggagcct 44460735  T
Q  101 tgtgtgggtttaaagatttcgaaacagccaagcagttgatctttaaaatgattgcagacagtatacatccttcaatatatgatatcagtataattattac 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44460736 tgtgtgggtttaaagatttcgaaacagccaagcagttgatccttaaaatgattgcagacagtctacatccttcaatatatgatatcagtataattattac 44460835  T
Q  201 tgcctatg 208  Q
    ||||||||    
T  44460836 tgcctatg 44460843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 44468169 - 44468376
Alignment:
Q  1 gtacatttggctttcaagatgttgaatgatatccctgaggaggtggacgaccgggaaaaattgtttaaattcatgctctttacacatgttttcggagcct 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44468169 gtacatttggctttcaagatgttgaatgatatccccgaggaggtggacgaccgggaaaaattgtttaaactcatgctctttacacatgttttcggagcct 44468268  T
Q  101 tgtgtgggtttaaagatttcgaaacagccaagcagttgatctttaaaatgattgcagacagtatacatccttcaatatatgatatcagtataattattac 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44468269 tgtgtgggtttaaagatttcgaaacagccaagcagttgatccttaaaatgattgcagacagtctacatccttcaatatatgatatcagtataattattac 44468368  T
Q  201 tgcctatg 208  Q
    ||||||||    
T  44468369 tgcctatg 44468376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 34502045 - 34501841
Alignment:
Q  1 gtacatttggctttcaagatgttgaatgatatccctgaggaggtggacgaccgggaaaaattgtttaaattcatgctctttacacatgttttcggagcct 100  Q
    |||||| |||||||  ||||||||||||||||||||||||   |||||| | ||||| ||| | |||||   | ||||||||  ||||||  | ||||||    
T  34502045 gtacatctggctttggagatgttgaatgatatccctgagg---tggacgcctgggaagaatggcttaaacaaacgctctttatgcatgttgccagagcct 34501949  T
Q  101 tgtgtgggtttaaagatttcgaaacagccaagcagttgatctttaaaatgattgcagacagtatacatccttcaatatatgatatcagtataattattac 200  Q
    |||||||||||||| |||| ||| |||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34501948 tgtgtgggtttaaaaatttagaagcagccaagaagttgatccttaaaatgattgcagacagtctacatccttcaatatatgatatcagtataattattac 34501849  T
Q  201 tgcctatg 208  Q
    ||||||||    
T  34501848 tgcctatg 34501841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 46359506 - 46359606
Alignment:
Q  1 gtacatttggctttcaagatgttgaatgatatccctgaggaggtggacgaccgggaaaaattgtttaaattcatgctctttacacatgttttcggagcct 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  46359506 gtacatttggctttcaagatgttgaatgatatccccgaggaggtggacgaccgggaaaaattgtttaaactcatgctctttacacatgttttcggagcct 46359605  T
Q  101 t 101  Q
    |    
T  46359606 t 46359606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 46359603 - 46359642
Alignment:
Q  169 ccttcaatatatgatatcagtataattattactgcctatg 208  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  46359603 ccttcaatatacgatatcagtataattattactgcctatg 46359642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 40180166 - 40180103
Alignment:
Q  96 agccttgtgtgggtttaaagatttcgaaacagccaagcagttgatctttaaaatgattgcagac 159  Q
    ||||||||||  |||||||||||| ||  |||||||||||||||||||||||||||||||||||    
T  40180166 agccttgtgtcagtttaaagattttgatgcagccaagcagttgatctttaaaatgattgcagac 40180103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 38604673 - 38604618
Alignment:
Q  97 gccttgtgtgggtttaaagatttcgaaacagccaagcagttgatctttaaaatgat 152  Q
    ||||||||| ||||| ||||||||||  |||||||||| |||||||||||||||||    
T  38604673 gccttgtgtcggtttgaagatttcgatgcagccaagcaattgatctttaaaatgat 38604618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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