View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15454_low_38 (Length: 222)
Name: NF15454_low_38
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15454_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 41896769 - 41896973
Alignment:
| Q |
1 |
ccgagactttggaattgctttcttgtcagtgacacgagctctatggagaagaaatccgttaaggttcataataagcaatttcttcttaggtccgagattc |
100 |
Q |
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| T |
41896769 |
ccgagactttggaattgctttcttgtcagtgacacgagctctatggagaagaaatccattaaggttcataataagcaatttcttcttaggtccgagattc |
41896868 |
T |
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| Q |
101 |
agcttctcaagagaaaggtccaattctggacttttgtgatcatcatggtcatcatgatcagcttcagagtctttgattttgatatttccatcactgcaac |
200 |
Q |
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| T |
41896869 |
agcttctcaagaaaaaggtccaattctggacttttgtga---------tcatcatgatcagcttcagagtctttgattttgatatttccatcactgcaac |
41896959 |
T |
|
| Q |
201 |
tctcttcctttgct |
214 |
Q |
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|||||| ||||||| |
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| T |
41896960 |
tctctttctttgct |
41896973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 2 - 203
Target Start/End: Original strand, 41901811 - 41902013
Alignment:
| Q |
2 |
cgagactttggaattgctttcttgtcagtgacacgagctctatggagaagaaatccgttaaggttcataataagcaatttcttcttaggtccgagattca |
101 |
Q |
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| T |
41901811 |
cgagactttggaattgctttcttatcacaaacatgagctctatggagaagaaatccgttaaggttcataattagcaatttcttcttaggtccgagattaa |
41901910 |
T |
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| Q |
102 |
gcttctcaagagaaaggtccaattctggacttttgtgatc-atcatggtcatcatgatcagcttc-agagtctttgattttgatatttccatcactgcaa |
199 |
Q |
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| T |
41901911 |
gtttctcaagagaaagaccaaattctgg-ttcttctgaacttttgtgatcatcatgatcagcttcaagagtctttgattttgatatttccatcactggaa |
41902009 |
T |
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| Q |
200 |
ctct |
203 |
Q |
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|||| |
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| T |
41902010 |
ctct |
41902013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 213
Target Start/End: Original strand, 41893594 - 41893814
Alignment:
| Q |
2 |
cgagactttggaattgctttcttgtcagtgacacgagctctatggagaagaaatccgttaaggttcataataagcaatttcttcttaggtccgagattca |
101 |
Q |
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| T |
41893594 |
cgagactttggaattgctttcttatcactaatatgagctctgtggagaagaaatccattaatgttcataatgagcaatttcttcttaggactatgattca |
41893693 |
T |
|
| Q |
102 |
gcttctcaagagaaaggtccaa---------ttctggacttttgtgatcatcatggtcatcatgatcagcttcagagtctttgattttgatatttccatc |
192 |
Q |
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| T |
41893694 |
gtttctcaagagaaagacccaactctagttcttctgaacatttgtgatcatcaaggtcaacatgattagcttcagagtctttgattttgatatttccgtc |
41893793 |
T |
|
| Q |
193 |
actgcaactctcttcctttgc |
213 |
Q |
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| T |
41893794 |
actgcaactctttttctttgc |
41893814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 214
Target Start/End: Complemental strand, 41828877 - 41828707
Alignment:
| Q |
44 |
tggagaagaaatccgttaaggttcataataagcaatttcttctta---ggtccgagattcagcttctcaagagaaaggtccaattctggacttttgtgat |
140 |
Q |
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|||||||| || || |||||||||| || |||||| |||||||| ||| | ||||||||||||||||||||||| ||||||| | |||||||| |
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| T |
41828877 |
tggagaagtaaaccattaaggttcaaaacaagcaacttcttcttctttggtgcaagattcagcttctcaagagaaagactcaattcttg---tttgtgat |
41828781 |
T |
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| Q |
141 |
catcatggtcatcatgatcagcttcagagtctttgattttgatatttccatcactgcaactctcttcctttgct |
214 |
Q |
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| T |
41828780 |
catcatggtcaacatgatcagcttcaaagtctttgattctgatatttccatcactgcaactttccttctttgct |
41828707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 44 - 214
Target Start/End: Original strand, 41885847 - 41886016
Alignment:
| Q |
44 |
tggagaagaaatccgttaaggttcataataagcaatttcttctta---ggtccgagattcagcttctcaagagaaaggtccaattctggacttttgtgat |
140 |
Q |
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|||||||| || || |||||||||| || |||||| |||||||| ||| | ||||||||||||||||||||||| ||||||| | |||||||| |
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| T |
41885847 |
tggagaagtaaaccattaaggttcaaaacaagcaacttcttcttctttggtgcaagattcagcttctcaagagaaagactcaattcttg---tttgtgat |
41885943 |
T |
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| Q |
141 |
catcatggtcatcatgatcagcttcagagtctttgattttgatatttccatcactgcaactctcttcctttgct |
214 |
Q |
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||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||| || | ||||||| |
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| T |
41885944 |
catcatggtcaata-gatcagcttcagagtctttgattctgatatttccatcactgcaactttccttctttgct |
41886016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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