View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15454_low_4 (Length: 744)

Name: NF15454_low_4
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15454_low_4
NF15454_low_4
[»] chr5 (8 HSPs)
chr5 (1-615)||(37237726-37238340)
chr5 (648-732)||(37237609-37237693)
chr5 (19-147)||(33595360-33595488)
chr5 (332-432)||(33595685-33595785)
chr5 (372-492)||(37309735-37309855)
chr5 (1-141)||(37310106-37310234)
chr5 (651-732)||(33595947-33596027)
chr5 (506-563)||(33595815-33595872)


Alignment Details
Target: chr5 (Bit Score: 603; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 1 - 615
Target Start/End: Complemental strand, 37238340 - 37237726
Alignment:
Q  1 aagctgaaattatttgtcgccttggctaattcttgatacgtaaactctgtcgactttgccaccataatgcctgtaaggccggcagcactaccagtagcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37238340 aagctgaaattatttgtcgccttggctaattcttgatacgtaaactctgtcgactttgccaccataatgcctgtaaggccggcagcactaccagtagcat 37238241  T
Q  101 gcccactggaacctgaagtttcatattctgcactacctgaggcttcaccaataacataaacaaaaatcagcaagtataaactatttaatgaaataaatac 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37238240 gcccactggatcctgaagtttcatattctgcactacctgaggcttcaccaataacataaacaaaaatcagcaagtataaactatttaatgaaataaatac 37238141  T
Q  201 agtttaatgaaacaaacatgttataagctattttcgcaagctctctcaaatactgaaataaatacttatatcataagataggttaaaagaaatattttta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37238140 agtttaatgaaacaaacatgttataagctattttcgcaagctctctcaaatactgaaataaatacttatatcataagataggttaaaagaaatattttta 37238041  T
Q  301 ataagaacttagaatatgaatgtttaaaaatattaccatcttgagttgaaaatgccctagaagtttgtggaagtttagttttctcttcctccttcttttg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37238040 ataagaacttagaatatgaatgtttaaaaatattaccatcttgagttgaaaatgccctagaagtttgtggaagtttagttttctcttcttccttcttttg 37237941  T
Q  401 gaagtatttggcatatatatagataacaaataatagaagtccaaatattcctgccatagctataccaacagctgaacccttagcaatacctgattatatt 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37237940 gaagtatttggcatatatatagataacaaataatagaagtccaaatattcctgccatagctataccaacagctgaacccttagcaatacctgcttatatt 37237841  T
Q  501 gaaccaaatttaagctcacaggaagcattgaccttttgtccattctcatatttttgtgaacaagctaacaaataatcatcttaatagcaaaagacaaacc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37237840 gaaccaaatttaagctcacaggaagcattgaccttttgtccattctcatatttttgtgaacaagctaacaaataatcatcttaatagcaaaagacaaacc 37237741  T
Q  601 tgttctgcaagaatg 615  Q
    |||||||||||||||    
T  37237740 tgttctgcaagaatg 37237726  T

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Target: chr5; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 648 - 732
Target Start/End: Complemental strand, 37237693 - 37237609
Alignment:
Q  648 tataaccaaattatatgaagcaatatttacttcttctataaatcattcaaaaatgaaaattgagataatcaatgttacttaccta 732  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37237693 tataaccaaattatatgaagcaatatttacttcttctataaatcattcaaaaatgaaaattgagataatcaatgttacttaccta 37237609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 33595360 - 33595488
Alignment:
Q  19 gccttggctaattcttgatacgtaaactctgtcgactttgccaccataatgcctgtaaggccggcagcactaccagtagcatgcccactggaacctgaag 118  Q
    |||||||||||||||||||| | |||| |||| ||||||||||||| ||| ||||||||||| ||| |||||||||| |||||||||| ||| |||||||    
T  33595360 gccttggctaattcttgatatgaaaaccctgttgactttgccaccagaatacctgtaaggccagcatcactaccagtggcatgcccacaggatcctgaag 33595459  T
Q  119 tttcatattctgcactacctgaggcttca 147  Q
    ||||||||||| |||||||||||||||||    
T  33595460 tttcatattctccactacctgaggcttca 33595488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 332 - 432
Target Start/End: Original strand, 33595685 - 33595785
Alignment:
Q  332 attaccatcttgagttgaaaatgccctagaagtttgtggaagtttagttttctcttcctccttcttttggaagtatttggcatatatatagataacaaat 431  Q
    |||||||||||||||||||| |||| ||||| || |||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33595685 attaccatcttgagttgaaactgccatagaaattcgtgtgagtttagttttctcttcttccttcttttggaagtatttggcatatatatagataacaaat 33595784  T
Q  432 a 432  Q
    |    
T  33595785 a 33595785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 372 - 492
Target Start/End: Complemental strand, 37309855 - 37309735
Alignment:
Q  372 agtttagttttctcttcctccttcttttggaagtatttggcatatatatagataacaaataatagaagtccaaatattcctgccatagctataccaacag 471  Q
    ||||||||||||||||| |||||||||| ||||||| || |||||||||||||||| |||||||||||||||||||||||||| ||   |||||| ||||    
T  37309855 agtttagttttctcttcttccttctttttgaagtatctgacatatatatagataactaataatagaagtccaaatattcctgctattattatacccacag 37309756  T
Q  472 ctgaacccttagcaatacctg 492  Q
     || ||||||||||| |||||    
T  37309755 ttgcacccttagcaagacctg 37309735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 37310234 - 37310106
Alignment:
Q  1 aagctgaaattatttgtcgccttggctaattcttgatacgtaaactctgtcgactttgccaccataatgcctgtaaggccggcagcactaccagtagcat 100  Q
    ||||||||||||||||||||||| |||| ||||||||| | ||||||||| ||||||||||||||||||||||||           | || |||||||||    
T  37310234 aagctgaaattatttgtcgcctttgctagttcttgatatgaaaactctgttgactttgccaccataatgcctgta-----------aata-cagtagcat 37310147  T
Q  101 gcccactggaacctgaagtttcatattctgcactacctgag 141  Q
    || ||||||| |||||||||||||| |||||||||||||||    
T  37310146 gcacactggatcctgaagtttcatactctgcactacctgag 37310106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 651 - 732
Target Start/End: Original strand, 33595947 - 33596027
Alignment:
Q  651 aaccaaattatatgaagcaatatttacttcttctataaatcattcaaaaatgaaaattgagataatcaatgttacttaccta 732  Q
    |||||||||||||||||||||||||||||||| |||||  || || ||| |  ||||||||| |||||||||||||||||||    
T  33595947 aaccaaattatatgaagcaatatttacttcttatataatgcactc-aaagtccaaattgagacaatcaatgttacttaccta 33596027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 506 - 563
Target Start/End: Original strand, 33595815 - 33595872
Alignment:
Q  506 aaatttaagctcacaggaagcattgaccttttgtccattctcatatttttgtgaacaa 563  Q
    ||||||||||||||| ||||||||||||||| ||| |||  |||| ||||||||||||    
T  33595815 aaatttaagctcacaagaagcattgacctttggtctatttgcatagttttgtgaacaa 33595872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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