View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15454_low_7 (Length: 631)
Name: NF15454_low_7
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15454_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 31 - 626
Target Start/End: Original strand, 27763984 - 27764579
Alignment:
| Q |
31 |
ataactatcaatttgtattaaataagtgaaactttttaaaacaaacatgcatgctttaaaaacatgttctaaatagaactattagttcaattaattaaca |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27763984 |
ataactatcaatttgtattaaataagtgaaactttttaaaacaaacatgcatgctttaaaaacatgttctaaatagaactattagttcaattaattaaca |
27764083 |
T |
|
| Q |
131 |
tgaannnnnnngttttgttatagggtgaccaagcctcaatagtaggtggtgccatagagtttgtgaaggagttagagcatctcttgcaatcacttgaagc |
230 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27764084 |
tgaatttttttgttttgttatagggtgaccaagcctcaatagtaggtggtgccatagagtttgtgaaggagttagagcatctcttgcaatcacttgaagc |
27764183 |
T |
|
| Q |
231 |
tagaaagttacaacttgtacaacaagaagtaacacaaaacaatgaagacatggcaatatcaaaaccaccttttgcacaattttttgtgtatcctcaatat |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27764184 |
tagaaagttacaacttgtacaacaagaagtaacacaaaacaatgaagacatggcaatatcaaaaccaccttttgcacaattttttgtgtatcctcaatat |
27764283 |
T |
|
| Q |
331 |
acatggtcccaaacacctaacaaatacacatccaagaccaaagctgccatagctgatatcgaggttacattgatcgagactcatgcaaaccttagaattc |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27764284 |
acatggtcccaaacacctaacaaatacacatccaagaccaaagctgccatagctgatatcgaggttacattgatcgagactcatgcaaaccttagaattc |
27764383 |
T |
|
| Q |
431 |
tcactaggacaagaccaggacaactaactaaattagtggctggttttcaaacactcttccttagtatcctacatctcaatgtcactaccatacaaccttt |
530 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27764384 |
tcactaggacaagaccaggacaactaactaaattagtggctggttttcaaagactcttccttagtatcctacatctcaatgtcactaccatacaaccttt |
27764483 |
T |
|
| Q |
531 |
ggtgttctactctatcagtgccaaggtatgcaattatattgatcctttatttgatatgatagtaattatatttctatctctaatttggtatctctg |
626 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27764484 |
ggtgttctactctatcagtgccaaggtatgcaattatattgatcctttatttgatatgatagtaattatatttctatctctaatttggtatctctg |
27764579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University