View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15454_low_9 (Length: 505)
Name: NF15454_low_9
Description: NF15454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15454_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 20 - 495
Target Start/End: Original strand, 42917565 - 42918040
Alignment:
| Q |
20 |
atatcctcgttgatgccggtgtcatgtttccagggtagggtttacaagtccattatgcggtatcaaattgctgcttcatgattgttttttgctctgattt |
119 |
Q |
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| T |
42917565 |
atatcctcgttgatgccggtgtcatgtttccagggtagggtttacaagtccattatgctgtatcaaattgctgcttcatgattgtatttttctctgattt |
42917664 |
T |
|
| Q |
120 |
tcattagttttctaggttaaccggccnnnnnnngtctacattgttaactgatttcagcgatgatgagcttggggtccagaagataatacctgatacaaca |
219 |
Q |
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| T |
42917665 |
tcattagttttctaggttaaccgacctttttttgtatacattgttaactggtttcagcgatgatgagcttggggtccagaagataatacctgatacaaca |
42917764 |
T |
|
| Q |
220 |
tttattaaaaaatggagccacaaaattgaagcagtagttataacacacggtcatgaagatcatatcggtgcattgccttgggtaatgcttcctactccaa |
319 |
Q |
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| T |
42917765 |
tttattaaaaaatggagccacaaaattgaagcagtagttataacacacggtcatgaagatcatatcggtgcattgccttgggtaatgcttcctactccaa |
42917864 |
T |
|
| Q |
320 |
agaaatatattcttttatcaaactagttttctcagatttactcccttagttttatttgagtatttttcatgtgatgcaatgcccgttgtttgatgtattc |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42917865 |
agaaatatattcttttatcaaactagttttctcagatttactcccttagttttatttgagtatttgtcatgtgatgcaatgcccgttgtttgatgtattc |
42917964 |
T |
|
| Q |
420 |
tgccataagaaactgagacgtacttaaacaagcacacttagtttgataaatgaacctacttggtgtctgtgctgct |
495 |
Q |
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| T |
42917965 |
tgccataagaaactgagacgtacttaaacaagcacacttagtttgataaatgaacctacttggtgtctttgctgct |
42918040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 171 - 312
Target Start/End: Complemental strand, 33965316 - 33965175
Alignment:
| Q |
171 |
tttcagcgatgatgagcttggggtccagaagataatacctgatacaacatttattaaaaaatggagccacaaaattgaagcagtagttataacacacggt |
270 |
Q |
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||||||| ||||||| || || || || ||||| |||||||||||||| ||||| | |||||||||||||||||||||||| | ||||||||||| ||| |
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| T |
33965316 |
tttcagctatgatgacctcggagtacaaaagattatacctgatacaacgtttataagaaaatggagccacaaaattgaagcgcttgttataacacatggt |
33965217 |
T |
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| Q |
271 |
catgaagatcatatcggtgcattgccttgggtaatgcttcct |
312 |
Q |
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| T |
33965216 |
catgaagatcatattggtgcgttgccctgggtaatgcttcct |
33965175 |
T |
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