View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15455_high_14 (Length: 236)

Name: NF15455_high_14
Description: NF15455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15455_high_14
NF15455_high_14
[»] chr4 (1 HSPs)
chr4 (70-221)||(5503991-5504142)
[»] chr8 (2 HSPs)
chr8 (1-69)||(24881255-24881323)
chr8 (1-57)||(24876770-24876826)
[»] chr6 (2 HSPs)
chr6 (1-69)||(14088010-14088078)
chr6 (1-69)||(14092542-14092610)
[»] chr2 (2 HSPs)
chr2 (1-69)||(33681560-33681628)
chr2 (1-69)||(33698617-33698685)
[»] chr1 (2 HSPs)
chr1 (1-69)||(46461277-46461345)
chr1 (1-66)||(46453879-46453944)
[»] chr7 (3 HSPs)
chr7 (1-69)||(9950088-9950156)
chr7 (1-69)||(9955077-9955145)
chr7 (1-69)||(32213800-32213868)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 70 - 221
Target Start/End: Original strand, 5503991 - 5504142
Alignment:
Q  70 catacggatgagaagtatatccactctagaagagtgcaattgtgcacaaacattaaatgcattcttcaaaaaccagcaagaaaagaaactgtgtttctct 169  Q
    ||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5503991 catacggataagaagaatatacactctagaagagtgcaattgtgcacaaacattaaatgcattcttcaaaaaccagcaagaaaagaaactgtgtttctct 5504090  T
Q  170 aagatgcgcaagggtcaaaatatttttatactgagcactatatagtttttct 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5504091 aagatgcgcaagggtcaaaatatttttatactgagcactatatagtttttct 5504142  T

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Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 24881255 - 24881323
Alignment:
Q  1 ttctttgcactttccatctttagattattccatatttagtaaacactaaatatttcacttattctcaca 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24881255 ttctttgcactttccatctttagattattccatatttagtaaacactaaatatttcacttattctcaca 24881323  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 24876770 - 24876826
Alignment:
Q  1 ttctttgcactttccatctttagattattccatatttagtaaacactaaatatttca 57  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24876770 ttctttgcattttccatctttagattattccatatttagtaaacactaaatatttca 24876826  T

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Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 14088010 - 14088078
Alignment:
Q  1 ttctttgcactttccatctttagattattccatatttagtaaacactaaatatttcacttattctcaca 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14088010 ttctttgcactttccatctttagattattccatatttagtaaacactaaatatttcacttattctcaca 14088078  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 14092542 - 14092610
Alignment:
Q  1 ttctttgcactttccatctttagattattccatatttagtaaacactaaatatttcacttattctcaca 69  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14092542 ttctttgcattttccatctttagattattccatatttagtaaacactaaatatttcacttattctcaca 14092610  T

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Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 33681628 - 33681560
Alignment:
Q  1 ttctttgcactttccatctttagattattccatatttagtaaacactaaatatttcacttattctcaca 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33681628 ttctttgcactttccatctttagattattccatatttagtaaacactaaatatttcacttattctcaca 33681560  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 33698685 - 33698617
Alignment:
Q  1 ttctttgcactttccatctttagattattccatatttagtaaacactaaatatttcacttattctcaca 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33698685 ttctttgcactttccatctttagattattccatatttagtaaacactaaatatttcacttattctcaca 33698617  T

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Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 46461345 - 46461277
Alignment:
Q  1 ttctttgcactttccatctttagattattccatatttagtaaacactaaatatttcacttattctcaca 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46461345 ttctttgcactttccatctttagattattccatatttagtaaacactaaatatttcacttattctcaca 46461277  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 46453944 - 46453879
Alignment:
Q  1 ttctttgcactttccatctttagattattccatatttagtaaacactaaatatttcacttattctc 66  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46453944 ttctttgctctttctatctttagattattccatatttagtaaacactaaatatttcacttattctc 46453879  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 9950156 - 9950088
Alignment:
Q  1 ttctttgcactttccatctttagattattccatatttagtaaacactaaatatttcacttattctcaca 69  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9950156 ttctttgcactttccatctttagattattccatatttaataaacactaaatatttcacttattctcaca 9950088  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 9955145 - 9955077
Alignment:
Q  1 ttctttgcactttccatctttagattattccatatttagtaaacactaaatatttcacttattctcaca 69  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  9955145 ttctttgcactttccatctttaaattattccatatttactaaacactaaatatttcacttattctcaca 9955077  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 32213800 - 32213868
Alignment:
Q  1 ttctttgcactttccatctttagattattccatatttagtaaacactaaatatttcacttattctcaca 69  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32213800 ttctttacactttccatctttaaattattccatatttagtaaacactaaatatttcacttattctcaca 32213868  T

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