View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15455_high_5 (Length: 453)
Name: NF15455_high_5
Description: NF15455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15455_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 90 - 442
Target Start/End: Original strand, 40843266 - 40843616
Alignment:
| Q |
90 |
aaataaatcattttacaaaggattaaatcacacctttaaggttacaaacagataaactacatacttagtaccgaaaaagaaaaatacatgctatactttt |
189 |
Q |
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| T |
40843266 |
aaatcaatcattttacaaaggattaaatcacacctttaaggttacaaacagataaactacatacttagtacctaaaaagaaaaatacatactatactttt |
40843365 |
T |
|
| Q |
190 |
ctatatacaaatatacattctatcaattccaattccatcctagaccacatttaatcagatcaattgt-nnnnnnntacaaatccaacaaaaccgcatact |
288 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
40843366 |
ctata---aaatatacattctatcaattccaattccatcctagaccacatttaatcggatcaattgtaaaaaaaatacaaatccaacaaaaccgcatact |
40843462 |
T |
|
| Q |
289 |
gttttgatatttgaacacagaatttttgtaggagtannnnnnngaaggggaaattttttgtagtattaaaatcgatttattcaccnnnnnnnnnnnntcg |
388 |
Q |
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||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40843463 |
gttttgatatttgaacacagaatttttgtagtattatttttttgaaggggaaattttttgtagtattaaaatcgatttattcaccaaaaaataaaaatcg |
40843562 |
T |
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| Q |
389 |
atttaacaccatcctctaatactacaagctatactagcaagtagtaccagtatt |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40843563 |
atttaacaccatcctctaatactacaagctatactagcaagtagtaccagtatt |
40843616 |
T |
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