View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15455_high_6 (Length: 406)
Name: NF15455_high_6
Description: NF15455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15455_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 3340383 - 3340770
Alignment:
| Q |
1 |
tgttaatacttagaattttatatatgtttgtatgtggaatgtgacaatgcagaagccaacctgttattccttgaatctcctgttggagttggattttcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3340383 |
tgttaatacttagaattttatatatgtttgtatgtggaatgtgacaatgcagaagccaacctgttattccttgaatctcctgttggagttggattttcct |
3340482 |
T |
|
| Q |
101 |
actcaaatacaaccagtgaatacaaacaattgggagatgatttcacaggtatttttcttaatctaaaatctttcatgcatattaaaatgttacattttcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3340483 |
actcaaatacaaccagtgaatacaaacaattgggagatgatttcacaggtattttacttaatctaaaatctttcatgcatattaaaatgttacattttcc |
3340582 |
T |
|
| Q |
201 |
ctaaaatatatgctacattttctatttttccttgctgatacaaaatactcacataaatttatgaaacagccaatgatacttacactttcctacataagtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3340583 |
ctaaaatatatgctacattttctatttttccttgctgatacaaaatactcacataaatttatgaaacagctaatgatacttacactttcctacataagtg |
3340682 |
T |
|
| Q |
301 |
gttcctcaagtttccttcatatagaacaagggcattgtacataggaggagagagctatggaggtattgaaatcacaatcagaataatc |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3340683 |
gttcctcaagtttccttcatatagaacaagggcattgtacataggaggagagagctatggaggtattgaaatcaccatcagaataatc |
3340770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 3332856 - 3332931
Alignment:
| Q |
47 |
atgcagaagccaacctgttattccttgaatctcctgttggagttggattttcctactcaaatacaaccagtgaata |
122 |
Q |
| |
|
|||||||||| ||| |||||||| | |||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
3332856 |
atgcagaagcaaacatgttattcttggaatctcctgttggagttggattttcttattcaaatacaaccagtgaata |
3332931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 262 - 374
Target Start/End: Original strand, 3333052 - 3333164
Alignment:
| Q |
262 |
tgaaacagccaatgatacttacactttcctacataagtggttcctcaagtttccttcatatagaacaagggcattgtacataggaggagagagctatgga |
361 |
Q |
| |
|
||||||||| |||||| ||||||| || || || || ||||| ||||||| ||| |||||||||||||| ||||| ||||||| ||||||||||||| | |
|
|
| T |
3333052 |
tgaaacagctaatgatgcttacacatttctgcacaattggtttctcaagtatccatcatatagaacaagagcattttacatagccggagagagctatgca |
3333151 |
T |
|
| Q |
362 |
ggtattgaaatca |
374 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
3333152 |
ggtattggaatca |
3333164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 48 - 150
Target Start/End: Complemental strand, 35794746 - 35794644
Alignment:
| Q |
48 |
tgcagaagccaacctgttattccttgaatctcctgttggagttggattttcctactcaaatacaaccagtgaatacaaacaattgggagatgatttcaca |
147 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||| || |||||||||| ||||| |||||| |
|
|
| T |
35794746 |
tgcagaagccaacatgttattcctagaatctcctgtcggagttggcttttcctattcaaatacaaccagtgattatcaacaattgggtgatgacttcaca |
35794647 |
T |
|
| Q |
148 |
ggt |
150 |
Q |
| |
|
||| |
|
|
| T |
35794646 |
ggt |
35794644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 372
Target Start/End: Complemental strand, 35794522 - 35794417
Alignment:
| Q |
267 |
cagccaatgatacttacactttcctacataagtggttcctcaagtttccttcatatagaacaagggcattgtacataggaggagagagctatggaggtat |
366 |
Q |
| |
|
||||||||||| |||||| ||| ||||| || |||||||||||||| || |||||||||| | |||| ||||||| |||||| ||||||| |||||| |
|
|
| T |
35794522 |
cagccaatgatgcttacaattttctacacaattggttcctcaagttcccatcatatagaagtaaaacattttacatagcaggagaaagctatgcaggtat |
35794423 |
T |
|
| Q |
367 |
tgaaat |
372 |
Q |
| |
|
|||||| |
|
|
| T |
35794422 |
tgaaat |
35794417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University