View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15455_low_16 (Length: 238)
Name: NF15455_low_16
Description: NF15455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15455_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 29014539 - 29014308
Alignment:
| Q |
5 |
atggacatcatcaacaagcacaaacgaatgtaccgcctgatcacatccagtgcctattcctacaaactattctaacccttatgtgggtcgaccaaactat |
104 |
Q |
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| T |
29014539 |
atggacctcataaacaagcacaaacgaatgtaccgcctgatcacatccagtgcctattcctacaaactattctaacccttatgtgggtggaccaaactat |
29014440 |
T |
|
| Q |
105 |
cctacagcttctggaccaagaactcctccaccaccacctccaccttcaaattttggttatgttcccaattttcatcgaagtagtgatggattgacaccga |
204 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29014439 |
cctgcagcttctggaccaagaactcctccaccaccacctccaccttcaaatgttggttatgttcccaattttcatcgaagtaatgatggattgacaccga |
29014340 |
T |
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| Q |
205 |
gttattttaatatgccatcatcatcaggaaca |
236 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
29014339 |
gttattttaatatgccatcatcatcaggaaca |
29014308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 29011227 - 29010986
Alignment:
| Q |
5 |
atggacatcatcaacaagcacaaacgaatgtaccgcctgatcacatccagtgcctattcctacaaactattctaacccttatgtgggtcgaccaaactat |
104 |
Q |
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|||||| |||| |||||||||| || |||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
29011227 |
atggacctcataaacaagcacagactaatgtacc--ctattcacatccagtgccatatcctacaaactattctaacccttatgtgggtggaccaagctac |
29011130 |
T |
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| Q |
105 |
cctacagcttctggaccaag------------aactcctccaccaccacctccaccttcaaattttggttatgttcccaattttcatcgaagtagtgatg |
192 |
Q |
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||| |||||||||||||||| || ||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||| | ||| |
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| T |
29011129 |
cctgcagcttctggaccaagttaccaaccaccaagaactccaccaccacctccaacttcaaatgttggttatcctcccaattttcatcaaagtaataatg |
29011030 |
T |
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| Q |
193 |
gattgacaccgagttattttaatatgccatcatcatcaggaaca |
236 |
Q |
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||||| | |||||||||| |||||||||||||||||||||||| |
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| T |
29011029 |
gattggcgtcgagttatttcaatatgccatcatcatcaggaaca |
29010986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 24081926 - 24081866
Alignment:
| Q |
5 |
atggacatcatcaacaagcacaaacgaatgtaccgcctgatcacatccagtgcctattcct |
65 |
Q |
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|||||| |||| |||||||||||||||||||||||||| || ||||||||||| |||||| |
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| T |
24081926 |
atggacctcataaacaagcacaaacgaatgtaccgcctactcgcatccagtgccaattcct |
24081866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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